Streptomyces malaysiensis HNM0141: I1A49_38800
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Entry
I1A49_38800 CDS
T07406
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssoi
Streptomyces malaysiensis HNM0141
Pathway
ssoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I1A49_38800 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssoi03019
]
I1A49_38800 (recQ)
03400 DNA repair and recombination proteins [BR:
ssoi03400
]
I1A49_38800 (recQ)
Enzymes [BR:
ssoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I1A49_38800 (recQ)
Messenger RNA biogenesis [BR:
ssoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I1A49_38800 (recQ)
DNA repair and recombination proteins [BR:
ssoi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
I1A49_38800 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Helicase_Sgs1
HHH
Motif
Other DBs
NCBI-ProteinID:
QPI60058
LinkDB
All DBs
Position
complement(9402124..9403995)
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AA seq
623 aa
AA seq
DB search
MALPDTGPDMSDAPGPETSAALDVLHRVFGYDAFRGGQQEIIDHVVAGGDALVLMPTGGG
KSLCYQIPALVRKGVGVVISPLIALMQDQVDALRNLGVRAGFLNSTQDLDERRLVEAEFL
AGELDLLYLAPERLRVESTLRLLDRGTVSLFAIDEAHCVAQWGHDFRPDYLALSELHERW
PTVPRIALTATATEATHSEIASRLKLQDALHFVASFDRPNIQYRIAPKNEPKKQLLELLR
TEHPGDAGIVYCLSRASVEKTAEFLVAQGIDAVPYHAGLDARIRAEHQARFLREDGLVVV
ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSTAWLAYGLQDVVQQRKM
IDTSEGDDTHRRRLGAHLDAMLALCETVECRRVGLLAYFGQESTPCGNCDTCLTPPEVRD
GTVPAQKLLSTVVRLKRERNQKFGAGQIIDILLGKKTAKVIQFDHDALSVFGIGTELREA
EWRGAVRQLLAQGLLGVEGDYGTLVLTDASAEVLNGRHEVRLRREPEKVSRAAKGKTGAS
GKTKKAPVDLAEEAVPVFERLRAWRAATAKEQGVPAYVVFHDATLREIATSLPATLDELG
TVNGVGENKLVKYGQGILDTLAS
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggctctccccgacaccggccccgacatgagcgacgcaccaggccccgagacgagcgcc
gcgctcgacgtcctgcaccgcgtcttcggttacgacgcgttccggggagggcagcaggag
atcatcgaccatgtggtggccggtggtgacgcgctcgtcctgatgccgaccggcggtggc
aaatcgctgtgctaccagatcccggcgctggtccggaagggcgtcggcgtcgtcatctcc
ccgctgatcgcgctgatgcaggaccaggtcgacgccctgcggaacctcggggtccgggcc
gggttcctcaactccacccaggacctggacgagcggcggctggtcgaggccgagttcctc
gcgggcgagctggatctgctctatctcgcaccggagcggctgcgggtcgagtccacgctg
cggctgctggaccggggcacggtctcgctgttcgccatcgacgaggcgcactgtgtggcc
cagtgggggcacgacttccggcccgactatctggccctgtccgagctgcatgagcgctgg
cccaccgtgccccggatcgcgctgaccgccaccgccaccgaggccacccactccgagatc
gcgtcccggctgaagctccaggacgcgctgcacttcgtggccagcttcgaccgcccgaac
atccagtaccggatcgcccccaagaacgagcccaagaagcagctgctggagctgttgcgc
accgagcacccgggcgacgccgggatcgtctactgcctgtcccgcgcctcggtggagaag
acggccgagttcctggtcgcccagggcatcgacgcggtgccgtaccacgcggggctggac
gcgcggatccgcgccgagcaccaagcgcgcttcctgcgcgaggacggtctggtcgtggtg
gccacgatcgcgttcggcatgggcatcgacaagcccgatgtgcggttcgtggcccatctg
gacctgcccaagtccgtcgagggctactaccaggagaccggccgcgccgggcgggacggg
ctgccctccaccgcatggctggcgtacgggctccaggacgtcgtccagcagcgcaagatg
atcgacacctccgagggcgacgacacccaccggcggcgcctgggcgcccatctcgacgcg
atgctggcgctgtgcgagacggtggagtgccgccgggtggggctgctggcctacttcggc
caggagtccaccccctgcggcaactgcgacacctgcctcacaccgccggaagtccgggac
ggcaccgtccccgcgcagaagctgctgtccacggtggtgcggctcaagcgggagcgcaac
cagaagttcggcgccggccagatcatcgacatcctgctcggcaagaagaccgccaaggtc
atccagttcgaccatgacgccctgtcggtgttcggcatcggcacggagctgcgcgaggcc
gaatggcgcggcgcggtacggcagttgctggcccaggggctgctcggggtcgagggggac
tacggcacgctggtgctcaccgacgcgagcgcggaggtgctgaacgggcggcacgaggtc
aggctgcggcgcgaaccggagaaggtctcgcgggccgcgaaggggaagacgggcgcctcg
gggaagaccaagaaggccccggtggatctggcggaggaggccgtgccggtcttcgagcgg
ctgcgcgcctggcgggcggcgaccgcgaaggagcagggtgtccccgcgtatgtggtcttc
cacgacgccaccctgcgcgagatcgcgacgagtctcccggccacgctcgacgagctcggc
acggtgaacggggtcggcgagaacaagctggtgaagtacggacaggggattctggacacc
ctggcgtcctga
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