Staphylococcus saprophyticus: SSP0802
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Entry
SSP0802 CDS
T00269
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssp
Staphylococcus saprophyticus
Pathway
ssp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSP0802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssp03019
]
SSP0802
03009 Ribosome biogenesis [BR:
ssp03009
]
SSP0802
Enzymes [BR:
ssp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SSP0802
Messenger RNA biogenesis [BR:
ssp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SSP0802
Ribosome biogenesis [BR:
ssp03009
]
Prokaryotic type
rRNA helicases
SSP0802
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
CMS1
NAT10_TcmA_helicase
AAA_19
Flavi_DEAD
HyfI_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAE17947
UniProt:
Q49Z29
LinkDB
All DBs
Position
828784..830304
Genome browser
AA seq
506 aa
AA seq
DB search
MQNFKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPL
IEKVADQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKKGP
QIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQRQTML
FSATMPKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEEYYTIVKELEKFDTFTSFLDVHQP
ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMDYIRQIEQANK
RQMTALRPPHRKEVLKARENDIKGKVQNWMSRDNEPRLQRIATELLGEYNDVDLIASLLQ
ELVESNDEVDVQLTFEKPLSRGKGRQGKGGPKRGGNHKRGGGKFDNKNRRSGKGGFNNKK
KNDRPSSDRNNNKKSMKGRTFADHKK
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaattttaaagaattagggatctcagataagatggcagaaaccctacaatccatg
gggttcaatgaggccactcctattcaaaaagagagtatccctcttgccttagaaggcaaa
gatgttcttggtcaagcgcaaacaggtacaggtaaaacaggtgcgtttggtattccatta
attgaaaaagtggcagaccaagaaggtgtacaatcattaatccttgcaccaacaagagag
ttagcaatgcaagttgctgaatcattaaaagcattcgctaaaggacaaaatattcaagtt
gttactgtatttggtggtatgccaatcgaccgtcaaattaaagcacttaaaaaaggtcca
caaatcgtagtaggtacaccaggtcgtgtaattgaccatttaaaccgtcgtacattaaaa
acgaatgatattcatacgcttatcctagatgaagcagatgaaatgatgaatatgggattc
attgatgatatgaaattcatcatggacaaaattccagctgaacaacgtcaaacaatgttg
ttctcagctactatgcctaaagcaattcaaacattggttcaacaattcatgaaatcacca
gttatcgttaaaacgatgaataatgaaatgtcagatccacaaattgaagaatattatact
atcgtaaaagaattagagaaatttgatacttttacaagtttcttagatgtacaccaacca
gaattagctatcgtattcggacgtacaaaacgtcgtgttgatgaattaacaagcgcgtta
atctcaaaaggatacaaagctgaaggattacatggtgatatcactcaagctaaacgttta
gaagtattgaaaaaattcaaaaatgatcaattagatattttagttgcaacagatgttgcg
gcaagaggacttgatatttcaggtgtaagtcacgtatacaactttgatatccctcaagat
actgaaagttatacgcacagaattggtcgtactggtcgtgctggtaaaaaaggtgttgca
atcacatttgtaaatccaattgagatggattatattcgtcaaattgaacaagcaaacaaa
cgccaaatgacagctttaagaccgcctcatcgtaaagaagtgttaaaagcacgtgaaaac
gatattaaaggtaaagtacaaaactggatgtcaagagacaatgaaccaagattacaacgt
attgctacagagttacttggtgaatataatgatgtggatttaatcgcgtcattattacaa
gagctagtcgaatcaaacgacgaagttgatgttcaattaacatttgaaaaaccattatct
cgcggtaaaggtcgtcaaggtaaaggtggaccaaaacgtggcggtaaccataaacgtggt
ggcggcaagtttgataacaagaaccgtcgttcaggtaaaggcggattcaacaataagaag
aaaaatgatagaccttcttctgacagaaacaataacaagaaatcaatgaaaggtcgcacg
tttgcagaccataaaaaataa
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