Staphylococcus saprophyticus: SSP1076
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Entry
SSP1076 CDS
T00269
Name
(GenBank) putative formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ssp
Staphylococcus saprophyticus
Pathway
ssp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ssp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SSP1076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssp03400
]
SSP1076
Enzymes [BR:
ssp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SSP1076
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SSP1076
DNA repair and recombination proteins [BR:
ssp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SSP1076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DZR
zf-Vps39_C
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
BAE18221
UniProt:
Q49YC0
LinkDB
All DBs
Position
1122866..1123750
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AA seq
294 aa
AA seq
DB search
MPELPEVEHVTRGIKPFVKGQKIESILFSDKVQEGKANHRETIVKGMELDTFKRFTRLYT
IVDIERRSKYIVFYLEKDGDKRILISHLGMAGGFFVVDKLEDISVPNYRKHWHVIFKLDN
DKLLVYSDIRRFGEIRNVASFEAYPSFLEIAPEPFEKEAMAHYLAWFDKKLYQNKPIKQM
ILDHRVISGCGNIYACEALFRSGIHPARLPKDLNHQEREMLFYYVREVLEAGIKYGGTSI
SDYRHADGSTGTMQQHLNVYKQKVCKVCGDDIATQVIATRNSHFCPTCQKIKEE
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgaattacctgaagtagaacatgtaacaagaggcattaagccatttgtaaaaggg
caaaaaatagaatctattctcttttctgataaagtacaagaaggaaaagcgaatcataga
gaaaccattgttaaaggtatggagcttgatacttttaaacgattcactaggctttatacg
attgttgatattgagcgaagaagtaagtatattgtcttctatttagaaaaagatggagat
aagcgaattctaataagtcatttaggtatggctggtggattttttgtcgtagataagctt
gaagatattagtgtgccaaattatcgcaaacactggcatgtcatatttaaattagataat
gacaaattacttgtgtattcagatattagacgctttggtgaaattagaaacgttgcttca
tttgaagcttacccatcatttttagaaattgccccagaaccttttgaaaaagaagctatg
gcacattatttggcttggtttgataaaaagttatatcaaaataaaccaattaaacaaatg
attctagaccaccgtgtcatatcaggatgtggaaatatatatgcttgcgaggcattattt
agatcaggtattcatccagctagattaccaaaagatttaaatcatcaggaacgagaaatg
ttattctattatgttcgagaagtactggaagcgggtataaaatatggtggaacaagcatt
tcagattaccgtcatgctgatggtagtacaggtacaatgcagcaacacctaaacgtatat
aaacaaaaagtttgtaaagtttgtggcgatgacattgcaacacaagtaattgcaacgaga
aatagtcatttttgtccaacttgtcaaaaaataaaggaagagtga
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