Staphylococcus saprophyticus: SSP1265
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Entry
SSP1265 CDS
T00269
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssp
Staphylococcus saprophyticus
Pathway
ssp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSP1265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssp03019
]
SSP1265
03400 DNA repair and recombination proteins [BR:
ssp03400
]
SSP1265
Enzymes [BR:
ssp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SSP1265
Messenger RNA biogenesis [BR:
ssp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SSP1265
DNA repair and recombination proteins [BR:
ssp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SSP1265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
BAE18410
UniProt:
Q49XT5
LinkDB
All DBs
Position
1306775..1308154
Genome browser
AA seq
459 aa
AA seq
DB search
MLNEALKKHFGFDTFKPGQKEIITHVLEKKDTLGILPTGSGKSLCYQLPTYINQQPTLII
SPLISLMDDQVMQLKLHGEHHVACIHSGMDEHERAQNIKQLTKSRFIFLSPEFLLQPHNF
KLIKHINLGIIVLDEAHCLSEWGYDFRPHYALVGKIVNHFHNATVLALTATAPSYLTFDL
EQILNKSFHIVKTTMNRDNISLSHKNFADDDEKLKWLLPSLEHAGPTIIYVSSKKMCLLL
AQQIYNYGFLTGIYHGDLSYQERHTVQHQFLNNEIPIIVATSAFGMGINKKDIRTIIHFH
LSTSPSNYMQEIGRAGRDGGQSQAISLYQPDDRFLLETLLFTDMITMEDVEIFELGQFLP
PEKSEVLQILYSYYTYQQLRNIFEISYKRKHLGYMRMLGYKHLDQCRRAYMIEFFNEQLS
EKPNQCCDNDSEINAINILNRKKVKRKMDFNEKIQNLFK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgcttaatgaagcgttaaaaaaacattttggttttgatacttttaaacctggacaaaaa
gaaatcataacgcatgtacttgaaaagaaagatacattaggtattttaccaactggaagt
ggcaaaagcctatgctatcaattgccaacatatataaatcaacaaccaacactaatcatc
tctccattaatctcattaatggatgatcaagtcatgcaacttaaactacatggtgagcat
catgtagcttgcattcactcaggaatggatgaacatgaaagggctcaaaacattaaacaa
ttgacgaaaagtcgctttattttcttaagtcctgaatttctactacaacctcataacttt
aaattaataaaacatataaatctaggaatcatcgtattagatgaggcacactgtctctca
gaatggggttatgatttccgaccgcattacgccttagttggcaaaatcgtcaaccatttt
cataacgctactgtattagctttaacagcaacagcaccatcctatttaacatttgattta
gagcaaatattaaataaatcttttcatatcgtaaagacaaccatgaatagagataatatt
tcgttatcgcataaaaactttgctgatgatgatgagaagttgaaatggctactaccttca
ttagaacacgctggtccaacaattatctatgtatcatctaaaaaaatgtgtctattatta
gcgcaacaaatatacaactatggctttttaactggtatttatcatggcgacttatcttat
caagagcgtcatacggtacaacatcaatttttaaataatgaaatcccaatcattgttgct
acaagtgcatttggtatgggcattaataaaaaagacatccgaacaattatccattttcat
ttatctacaagtccttctaattatatgcaagaaataggtcgtgctggtcgtgacggggga
caaagtcaagccattagtctttatcaaccagatgatcgctttttattagaaacactatta
tttaccgatatgataacgatggaggatgttgaaatattcgaactcggtcaatttttgcct
cctgaaaaatcagaagttctacaaatactttatagctattatacatatcaacaattacgt
aatatattcgagatttcatacaaacgtaaacatttaggatatatgcgcatgttaggctat
aagcatcttgatcaatgtcgacgtgcttatatgatagaattttttaatgaacaattgagc
gaaaaaccaaatcagtgctgtgataatgattctgaaattaatgcaataaatatattaaat
agaaaaaaagttaaaagaaaaatggattttaatgaaaaaatacaaaatttatttaaataa
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