Staphylococcus saprophyticus: SSP1998
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Entry
SSP1998 CDS
T00269
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssp
Staphylococcus saprophyticus
Pathway
ssp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSP1998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssp03019
]
SSP1998
03400 DNA repair and recombination proteins [BR:
ssp03400
]
SSP1998
Enzymes [BR:
ssp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SSP1998
Messenger RNA biogenesis [BR:
ssp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SSP1998
DNA repair and recombination proteins [BR:
ssp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SSP1998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RQC
HRDC
RecQ_Zn_bind
ResIII
Fer2_4
Motif
Other DBs
NCBI-ProteinID:
BAE19143
UniProt:
Q49VR7
LinkDB
All DBs
Position
complement(2064213..2065991)
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AA seq
592 aa
AA seq
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MESTLSHYFGYDTYRPGQKEIITRVMNHQNVLGVLPTGGGKSICYQVPGLMLGGTTIVIS
PLISLMKDQVDQLKAMGIHAAYLNSSLTQKQQKEIETQLRKGEIQFLYVAPERFDNVYFI
RLLQQLSIHLVAFDEAHCISKWGHDFRPSYQDVIHKVFALPQDFTIVALTATATIEVQKD
IMERLNIGKHDEVKTSTKRRNLVFKVNPTYQRQKFVMEYVKEHKNAAGIIYCSTRKQVEE
LHDALENNGVDSTIYHAGLSNKEREAAQNDFVYDRVRVVVATNAFGMGIDKSNVRFVIHY
NMPGDLESYYQEAGRAGRDGLNSDCILLFSERDIGLHQYFISSSKADDDYKDKMGEKLNK
MILYTKTKKCLEATLVHYFEPNEKLEECGQCSNCVVENKTYNMTDEAKMIVSCIARMKQQ
ESYSVIIQVLRGEESDYIRYCDYHQLSTHGIMKNYTTSDLSHLIDELRFKGFLNEHDEIL
TCDNSVKELLNNQVDVYTTPFKRKSKEKVNINTVEGVDRALFDELINVRKQLSESLSIPP
VSIFSDFTLEEFAKRKPESKQEMILIDGVGSYKLKHYCPMFLEKIQTYKAKS
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggagtcaacattatcacattattttggctatgatacttatcgtcctggtcaaaaagaa
atcataactagagtcatgaaccatcaaaatgtgctaggtgtgttaccaactggtggggga
aaatcaatttgttatcaagtaccaggattaatgttgggtggaacgacgattgtcatcagc
ccattaatttctttgatgaaagaccaagttgatcaattaaaggccatgggtatacatgca
gcttacttaaatagtagtttgacgcaaaagcaacaaaaagaaattgagacccaacttcga
aaaggtgagattcaatttttatatgttgcaccggaacgttttgataatgtttattttata
agattattacaacaactatctattcatttagttgcatttgacgaagcacattgtatttca
aaatggggtcatgattttagaccgagttatcaagatgttattcataaagtgtttgcatta
ccacaagattttacgattgtagcacttacagcgacagccacgatagaagttcaaaaagac
atcatggaacgtttgaatattggtaagcatgatgaggttaaaacaagtacaaaacgacgt
aatttagtttttaaagtaaatccgacttatcaacgtcagaaatttgtgatggagtacgtc
aaagaacataaaaatgcagcgggtattatttattgttcaacgcgtaaacaagtagaagaa
ttacatgacgctttagaaaacaacggcgtagatagtaccatataccacgctgggctttct
aataaagaacgtgaggcagcacagaacgattttgtttatgaccgtgtccgtgttgtagta
gctaccaacgcatttggtatgggaattgacaaatctaatgttcgttttgtgatccattac
aatatgccaggtgatttagaatcttattatcaagaagcaggacgtgcaggacgtgatggt
ttaaatagtgattgtatattgctatttagtgaacgtgatattggcttgcaccaatatttt
atttcatcatcaaaagcagacgatgattacaaagataaaatgggtgaaaagcttaataaa
atgatactttatactaaaactaagaaatgtctggaagcgacgcttgttcattattttgag
ccaaatgaaaaattagaagaatgtggccaatgtagtaattgtgtcgttgaaaataaaacg
tacaatatgacggatgaagctaagatgattgtcagttgtattgcacgtatgaaacaacaa
gaaagttatagtgtgattattcaggtgttgagaggcgaagagtcagattatattcgctat
tgtgattatcatcagctatcaacacatggcattatgaaaaattatacaacatctgatctc
agtcaccttattgatgaacttagatttaaaggatttttaaatgaacacgatgaaatttta
acttgtgataattcagtcaaagaattattgaataaccaagtagatgtatatacaacacca
tttaaacgtaagtcgaaagagaaagtaaatatcaatacggtcgaaggtgtagaccgtgca
ttgtttgatgaattaattaacgtacgcaagcaattaagtgagtcgttaagtattccacca
gtcagcatattctcagatttcacattagaagaatttgcaaaaagaaaaccagaatctaaa
caagagatgattttgattgatggtgtaggaagttataaattaaagcattactgtccgatg
tttttagaaaaaatccaaacatacaaagctaaaagttaa
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