Shewanella spartinae: K0I31_01730
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Entry
K0I31_01730 CDS
T09209
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sspa
Shewanella spartinae
Pathway
sspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I31_01730 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspa03019
]
K0I31_01730 (rhlB)
Enzymes [BR:
sspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0I31_01730 (rhlB)
Messenger RNA biogenesis [BR:
sspa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0I31_01730 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
Motif
Other DBs
NCBI-ProteinID:
QYJ94143
LinkDB
All DBs
Position
377974..379281
Genome browser
AA seq
435 aa
AA seq
DB search
MSETHLTNQKFADFSLHPEIQQALVESGFEYCTPIQALSLPILLEHKDIAGQAQTGTGKT
LAFLVATFNHLLTTPIPDGRQLNQPRAIVMAPTRELAIQIAKDGELLAKHTGLKVGIVYG
GESYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINLSAIQAVVLDEADRMFDLGFIKDIR
FLFRRMPDANERLNMLFSATLSMKVQELAYDHMNDPEKVEIAPSEKTSKNITEEIFYPSM
EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWAHLEGDGHRVGLLTGDVPQKKRIRILE
QFTEGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFA
CEEYALNLPAIEHYIQHSIPVTNYDSEALLDDIPPPVRIHRKHSPRPTGRSGGGKPQGGR
PGARPRRHDRTRRHS
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatttaactaatcaaaagtttgccgacttttctcttcatccagagata
caacaggcactagtcgaaagcggctttgaatattgcacgcctatccaggcattatcatta
ccgattttactcgaacataaagatatcgcaggccaagcgcagacgggtacaggtaaaacc
ctggcttttctggtcgccaccttcaatcatctgctaaccacccccatccccgacggacgt
caactcaatcagcccagagccatagtgatggcaccgacccgcgaactggctattcagatc
gccaaggacggggagctgctggcgaaacataccggccttaaggtgggtattgtctacggc
ggagagagctacgaagtgcagcgcaaggtgttggataagggcgtcgatatcctgatcggt
accactggtcgcatcatagattatgtgcgtcagggggtgatcaacctcagcgccattcag
gcggtggtgttggacgaagccgaccgcatgttcgatctcggtttcatcaaagatatccgc
ttcctcttcagacgtatgccagacgccaacgagcgtttgaacatgctcttctcggcaact
ctgtcgatgaaggtgcaggagctggcctacgatcacatgaatgatcccgagaaggtcgag
atcgcgccaagcgagaagacgtctaagaacatcaccgaagagatcttctatccgtcgatg
gaagataagatgcgtctgctgctaaccctgatcgaagaagattggccagagaaggcgatc
gtgttctctaacactaagcacagctgtgaaaacctctgggctcacctggagggtgacggt
caccgtgttggtttgcttaccggtgatgtaccgcagaagaagcgtatccgcattcttgag
cagttcaccgagggtcagctggatatcctggtcgctacagacgttgcggcgcgcggtctg
catatctcagacgtgtcccacgtctataactatgatctgcccgatgactgtgaagactat
gtacaccgtatcggtcgtaccggtcgtgcgggtcagaaaggggtctctgtcagtttcgct
tgtgaagagtacgccctgaacctgccggctatcgagcactatattcaacatagtattcct
gtgactaactacgacagcgaagcgctgctcgatgatattccgccaccagtgcgcattcat
cgtaagcattcgccacgtcctacaggccgttccggtggtggtaagccacagggtggtcgt
ccgggtgcacgtccaagacgccacgataggacccgtagacacagttaa
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