Shewanella spartinae: K0I31_02330
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Entry
K0I31_02330 CDS
T09209
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
sspa
Shewanella spartinae
Brite
KEGG Orthology (KO) [BR:
sspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspa03021
]
K0I31_02330 (rapA)
Transcription machinery [BR:
sspa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
K0I31_02330 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
FtsX_ECD
Motif
Other DBs
NCBI-ProteinID:
QYJ94253
LinkDB
All DBs
Position
complement(501091..503997)
Genome browser
AA seq
968 aa
AA seq
DB search
MPFSLGQRWISDTESELGLGTVIGLEGRMVTLMFPATDENRMFARDDAPLTRVIYNPGDI
IESHEGWSLKVSEIEEKNQLVIYHGIHTETGEEVSLRETLLNHNIRFNKPQDRLFAGQID
RLDRFGVRYQSQLLRHKLATSDLLGLQGPRVGLIPHQQWIAHEVGQRFAPRVLLADEVGL
GKTIEAGLIIHQQLLTGRAERILIIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAYAD
HDNPFYTEQLVICSLELLRKKKRLDQALDADWDLMVVDEAHHLEWTEEAPSRAYRVVEAL
SEVVPGVLLLTATPDQLGHQSHFARLRLLDPDRFYDYQAFLKEEESYKEVASAADALASG
KRLPDEAVASLTELLNEKDITPALRLIEDESVDNEQRDQARSELLQELLDRHGTGRVLYR
NSRASVKGFPTRIFNAHPQTMPAQYETAARVSDMMGGQTDLTAKVKQALSPEKLYQAFES
DSASWWKFDPRVDWLIDFLKNHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMS
IIERDKAGAYFAQESGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDR
IGQANDVEIHLPYLANTAQENLMNWYHKGLNAFEQTCPTGHILFNEFSEELLTQLVYRDE
DKFTQLLNHTQSRYKALKKAMEQGRDKLLEINSHGGDKAQKLVESLAARDQDTQLIGSVI
RLWDIIGVEQEDSGENAIVLHPSEHMMFPTYPGLPEDGITVTFDREMALSRDDIALITQE
HPLVQTGLDLITSSETGTTSVAVLKNKALPAGTIFLELIYMADASAPRSSQLYRYMPPTP
VRVLLDKNGNNLSQNVSYESFDKQLSAVNRHIASKLVNASQTLLHPLFAKGEEFALAAMK
QLTEEASNKMTQQLTAELERLEALKAVNPNIRDEELEHLRNQMVELGNYLDACQLQLDAV
RLVLVSHA
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgcccttttccttaggtcaacgttggattagtgataccgaatcggaactcggtttaggt
actgtcattggactcgaaggccgtatggtcaccctgatgttccccgccactgacgaaaac
cgcatgtttgcccgcgacgatgccccgctaacccgagtgatctataaccctggcgatatc
attgagagtcacgaaggatggagtctcaaggtcagcgagatcgaagagaagaaccagctg
gtgatctaccacggtatccacaccgagaccggcgaagaggtcagcctcagagagacgctg
cttaaccacaatattcgtttcaacaagccccaagacagactgtttgccggccagatcgac
cgtctggacagattcggcgtgcgctatcagagccagctgctgcgtcataagctggccacc
tcagatctgctgggcctacagggtcctcgcgtcggcctgatcccccatcagcagtggatt
gcccatgaagtgggccagcgcttcgcgccgcgcgtcttattggcggacgaggtgggcctg
ggtaagaccatcgaagccggcctgatcatccatcagcagctgctgaccggccgcgccgag
cgtatcctgatcatagtgccagacaccctacgccatcagtggttggtggagatgctgcgc
cgtttcaacctgcgcttctctgtgtttgatgaagacagatgcgtcgaggcctacgccgac
cacgacaaccccttctacacagagcagctggtgatctgttcactcgagctgctgcgtaag
aagaagcgcctggatcaggccctggatgccgactgggatctcatggtggtcgacgaggcc
caccacctggagtggaccgaagaggcgccgagccgcgcctaccgcgtggtcgaggccctg
agtgaagtggtgcccggcgtgctgctactgaccgccaccccggatcagctgggccaccag
agccacttcgcccgtcttcgtctgctggatccagaccgtttctacgactatcaggccttc
ctcaaagaggaggagagctataaagaggtggccagcgccgccgatgctctggccagcggg
aagcgtctgcccgacgaggccgttgccagcctgaccgagctgctcaacgagaaagatatc
accccggcgctgcgtctgattgaagatgagagcgtcgataacgaacaacgcgaccaggcc
cgcagcgagctgctgcaggagctgttagacagacacggcaccggccgtgtgctctatcgc
aacagccgcgcctcggtgaagggcttcccgacccgtatcttcaacgcacacccacagacc
atgccggctcagtatgagactgccgccagggtgtctgacatgatgggtggccagacagat
ctgaccgccaaggtgaaacaggccctgagcccagagaagctatatcaggccttcgagagt
gatagcgccagttggtggaagttcgaccctagggtcgactggctgatcgatttccttaag
aaccatcgcagcaagaaggtgctgatcatcgccagccaggcggagaccgccctgagcctg
gaagaggccctgcgtacccgtgaagggattcaggccaccgtcttccacgaaggtatgtct
atcatagagcgcgacaaggccggcgcctacttcgcccaggaaagcggcggcgcccaggca
ctgatctgtagcgaaatcggatcggaaggtcgtaacttccagtttgccagccacctggtg
ctgttcgatctgccgctgaatccggatctgctggagcagcgcatcggccgtctggaccgt
atcggtcaggccaacgatgtcgagatccatctgccttacctggccaacacggcccaggaa
aacctgatgaactggtaccacaagggactgaacgccttcgagcagacctgccctaccggc
catattctgtttaacgagttttccgaggagctgctgacccagctggtctaccgcgacgaa
gacaagttcacccagctgctcaaccacacccagagccgctacaaggcgctgaagaaggcg
atggaacagggccgcgacaagctgctggagatcaactcccatggcggcgacaaggcgcag
aagttggtggagagtctggcggcccgcgatcaggacacccagctgatcggctctgtgatc
cgcctgtgggatatcataggcgtcgagcaggaagacagcggcgagaatgccatagtgttg
cacccgagcgagcacatgatgttcccgacctacccgggtctgccggaagatggcattacc
gtcaccttcgaccgcgagatggcgctgtcacgcgacgatatcgccctgatcacccaggag
cacccgctggtgcagacggggctggatctgatcacctcttccgagacaggcaccaccagc
gtcgccgtgctcaaaaacaaggcactacctgcgggcaccatcttcttggagctgatctat
atggccgatgcctcggcgccgcgctcgagccagctctaccgctacatgccaccgaccccg
gtacgcgtgctgctggacaagaatggcaacaacctgtcgcagaatgtcagctacgagagc
ttcgacaagcagctgagcgcggtcaaccgccatatcgccagcaagctggtgaatgcctcg
cagaccctgctgcatccgctgtttgccaagggtgaggagtttgccctggcggcgatgaag
cagctgaccgaagaggccagcaacaagatgacccagcagctcaccgcagagctggagcga
ctggaggccctcaaggcggtcaatcccaacattcgtgacgaggagctggagcacctgaga
aatcagatggtcgagctgggcaactacttagatgcctgtcagctgcagctagacgccgtg
cgtctggtactggtcagccacgcctaa
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