Shewanella spartinae: K0I31_03085
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Entry
K0I31_03085 CDS
T09209
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sspa
Shewanella spartinae
Pathway
sspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I31_03085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspa03019
]
K0I31_03085
Enzymes [BR:
sspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0I31_03085
Messenger RNA biogenesis [BR:
sspa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0I31_03085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
DUF8086
HEM4
P-loop_SecA
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QYJ94389
LinkDB
All DBs
Position
complement(677836..679311)
Genome browser
AA seq
491 aa
AA seq
DB search
MSFTSLGLSTPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL
ELLSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQL
KRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQ
NLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKSKKSAALVKLIQQ
GDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLVAT
DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLADIER
LIGKLLPRAEVEGFEPTHTLPETNLTPKRHGQHKGPRNPKPKSNNQRSSNRSSNGQGSDK
AGKPRSGDQAQGNKEGQGRRRTGASTGTSKPVSEGQQAQNQGKQEHRDGNAPARRRRRRR
PSQGTPKPATN
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctccctggggttatccacccccattctcaaagctgtagccgacaaaggt
tatcaaaccccctcgcctattcaggcccaggctatcccagcagtattgtcgggtaaagat
gtgatggcggcggcgcagacagggacgggcaagacagccggctttaccctgccgctactg
gaactactgagccaaggccctcgcgcccgcagtaaacaggtgcgcgccctggtcttgacg
ccaacccgcgaactggcggcccagatcgcggaaagcgtcaccacctatggtcagcatctg
ccgcttcgcagcgccgtggtgttcggcggtgtcggcatcagcccacagatcagtcaactt
aagcgcggcgtcgatatcctggtggccacaccgggccgcctgttggacctctatcagcaa
gatgccgtgagcttctctcagctggagacactggtgctggatgaggccgaccgcatgctg
gacatgggctttattcacgacatcaagaagatcctcgccatcttaccgcccaagcggcag
aacctgatgttttcggccaccttctccgatgagatccgcaccctggccaaggggctggtg
aacaatccggtggagatctcggtcactccgcgcaacagcacagccaacacggtacagcag
ctgatctgcccggtagacaaaagcaagaaatctgcagccttggtcaagcttatccagcaa
ggtgactggcaacaggtgctggtatttagccgtaccaagcatggcgccaaccgtctggct
aagcatctcgaggccaaagggatcaccgccgcggccatccatggtaacaagagccagggt
gcccgcaccaaggcgctggctaactttaagtcgggcgacgtgcgcgtgctcgtagccacc
gacatcgccgcccgtggcctggatatcgaccagctgcctcaagtggtcaactttgacctg
cctaacgtgcccgaagactatgtgcaccgcatcggccgtaccggccgcgccggcgccgat
ggcaaagcggtctccctggtgagcgacgaagaggccaaactgctggcggatatcgagcgc
ctgatcggcaagctgctgccgcgtgctgaagtagaaggcttcgagccgacacacaccctg
cccgagaccaatctgacgcctaagcgccacggtcagcacaagggaccgcgtaatcctaag
cctaaaagcaacaaccaacgcagcagcaatcgctcaagcaacggccagggttcagacaag
gctggaaagcctcgcagcggcgatcaagctcagggcaacaaagagggtcagggccgtcgc
cgaacaggcgcaagtactggtacaagcaagcctgtgagcgaaggtcaacaagcgcaaaac
caaggcaaacaagagcacagggacggtaacgccccagctcgccgtcgcagacgtcgtcgc
ccgagccagggcacgcctaaaccggccacgaattag
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