Shewanella spartinae: K0I31_08200
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Entry
K0I31_08200 CDS
T09209
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
sspa
Shewanella spartinae
Pathway
sspa03030
DNA replication
sspa03430
Mismatch repair
sspa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0I31_08200 (holB)
03430 Mismatch repair
K0I31_08200 (holB)
03440 Homologous recombination
K0I31_08200 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sspa03032
]
K0I31_08200 (holB)
03400 DNA repair and recombination proteins [BR:
sspa03400
]
K0I31_08200 (holB)
Enzymes [BR:
sspa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K0I31_08200 (holB)
DNA replication proteins [BR:
sspa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K0I31_08200 (holB)
DNA repair and recombination proteins [BR:
sspa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K0I31_08200 (holB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta2
Mx_ML
DUF3323
FlhD
Zn_ribbon_TOP3B
Motif
Other DBs
NCBI-ProteinID:
QYJ95321
LinkDB
All DBs
Position
1820188..1821105
Genome browser
AA seq
305 aa
AA seq
DB search
MDLPWLTPAREAFCSQLISGQQGHAYLLGIHQGYGGMQLANTLAQASLCMAAPTQGGACG
VCKSCQLFIAGNHPDCYQLEADGNQIKVDQVRELCQKLTATAQQGGRRVAVIKNCERLNT
AAANALLKTLEEPGRETLLLLQSDTPSRLMATISSRCQRLHCQLPSREAVQEWLAAQFTL
TSDVTWCLPVVGGPVDLLTALNDGRYEALIGLRKAWVQSLSSGHLCANLTNIDEKQVSDA
LKVLYVVLRQKLVKQKNADALINIKITKFAAKVMETYHSLSMMPNVNFMAVFQAFILEYQ
SLTTS
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggatctaccttggttaaccccggctcgtgaggctttctgtagtcagctaatatctggc
cagcagggccacgcctatctgttggggatccaccaaggctatggcggcatgcaacttgcc
aataccttggctcaggccagcctgtgtatggcggcgccgacccaaggtggtgcctgcggg
gtgtgtaagagctgtcagctgtttatcgccggtaaccatcctgattgctatcagctggag
gccgacggcaatcagatcaaggtagatcaagtcagggagctgtgtcagaagttgaccgct
accgcccagcaagggggcagacgggtcgctgtgattaaaaactgtgagcgactcaatacc
gcggcggccaatgcactgttgaagactttggaagagccgggcagagagactctcttgctg
ctgcagagtgataccccaagtcgtttgatggctaccatcagcagtcgttgtcagcgcctg
cattgccagctgccgagccgtgaggcggtgcaggagtggctggcggcgcagtttacactt
accagtgatgtgacctggtgtctgccggttgtcggcggccctgtcgatctgctcaccgcc
ttaaatgatggccgctatgaagccttgatcggcctgagaaaagcctgggtgcaaagtttg
tcgtctgggcacctgtgtgctaacttaactaatatagatgaaaagcaagtttctgatgca
cttaaggttttgtatgttgtcctgcgacaaaaactggtgaagcagaaaaatgctgatgca
ttaattaacatcaagataacaaaatttgcagccaaggttatggagacgtatcatagcctg
agtatgatgcctaatgtgaattttatggccgtttttcaggcgtttatcttagagtatcag
tcgctaacaacaagttaa
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