Shewanella spartinae: K0I31_11160
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Entry
K0I31_11160 CDS
T09209
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sspa
Shewanella spartinae
Pathway
sspa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K0I31_11160 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspa03400
]
K0I31_11160 (recB)
Enzymes [BR:
sspa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K0I31_11160 (recB)
DNA repair and recombination proteins [BR:
sspa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K0I31_11160 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
AAA_25
ResIII
Motif
Other DBs
NCBI-ProteinID:
QYJ92207
LinkDB
All DBs
Position
2506861..2510514
Genome browser
AA seq
1217 aa
AA seq
DB search
MATQTLDPLSLPLSGTRLIEASAGTGKTYTIAGLYVRLLLGDSQRAPLSCEQILVVTFTN
AATQELRDRIRKKIQLAYRAFLGMEVDDPLINTLYSEAEAEPEARSQALKRLDLALKSLD
EAAIFTIHGFCQRILSDMAFESSLLFESEFTLDDSEYLHHAVRDFWREACYPLPGYLAQI
ISNKFSDPDSLTKQLRPLLGANQASVSPTPEAFSQVSERLSQSLSRLRLIWPREREATLE
LLKTLPLNGTRFGKKDQGYPKLETLFAAMDNWAAQPLSLPDSKVLGALALGDLKLNKGGE
IPTPEQAPLLAHIERVTETIDTLVPSFLYGARDGIKRRFAAQKQLKNLRTPDDLLIALAD
ALSEETDQEQALARAIAKRFPIALIDEFQDTDPLQYQIFSRIYQGQQVSTDSDLGLLMIG
DPKQAIYAFRGADIHTYIHARGQTENHYSLDTNYRSSQAMVEAVNQLFSRSDDPFISQAI
PFELIKPSPKAAEKRLVEKVSQTSALRLKLLGEDPNAGLNKASARSQLAEDAANEIARLL
NEAQRGECLKQNKPLKAKDIAVLVRDRNEAAYIKSALSARGIGAVFLSRDSVFDTLVAKE
LALVLLAIANPKDERALRSAMATALLGYDAQAIHAFNLDEDVRQQQLEAFDNLHHTWLKR
GIMPCMMALAADTHLIERLLTADEGQRRLTDFRHLGELLQQKAMELDGISALLNWYQQTL
IEVSSTEEAQLRLESEQNLVQIVTIHKSKGLEYPICFLPFVSLARDNRRKPAPMLYHEQD
ALVWDIDQSDEGWAKYKAENLAEDLRLLYVALTRPVLACYCYVANHSRFTKRDGISSQLF
ETAIGYLLGIETKACEFADIQAAAQALASEAISVDLVESDAPKLDFDPIDTTDAVKLAPR
PLSRRREIPWRVGSYSGLVKHSAHEQISPGMGDEAFPELEQLAPDSEQLSRFSFERGANA
GSFLHWVLEQIDFTQADTSLGDELPKAMERFGIDSEWQDMLHAWYLDLLHVPLDGDALRL
ASLSQAQKLVEMEFYMPIGKLDAPGLNQLLRQYGYSAALNFETLEGMLKGFIDLTFEYQG
KFYIADYKSNHLGDHLSHYEKPAMLRAIAGHHYDLQYIIYSLALHRYLKLRLPGYQYNQH
VGGCYYLFLRGMSADSPSTGVYYDKPPLGLIQALDTLLSEAETSKSQAESQAEPESHSPT
DRQSDMPSGPAQGELDL
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacagacactggatcccctaagcctgccgctgtcgggtactcggctcatcgag
gccagcgcgggtaccggcaagacctacaccatcgccggactctatgtgcgcttattattg
ggcgatagccagcgcgcgccgctaagctgcgagcagatcctggtggtgacctttaccaac
gccgccacccaggagcttagggatcgtatccgcaagaagatccagctggcctaccgcgcc
tttctcggcatggaggtggatgatccgctgatcaacacactctattctgaggctgaggcc
gagcccgaggcgcgaagccaggcgctgaagcgcctggatctcgcgctcaagtcgctggat
gaggcggcgatttttaccattcatggtttctgtcagcgcattctgtcggacatggcgttc
gaatcatccctgctgtttgagtctgaatttaccctggacgacagcgagtacttgcaccat
gcggtgcgcgacttctggcgagaggcctgctatccgctgcccggctatctggcgcagatc
atcagcaacaagtttagcgatccagacagcctgaccaagcagctaaggccgctactcggc
gccaatcaggccagcgtctcgccgacacccgaagccttcagtcaggtatcggagcgcctg
agtcagagcctttcgagactcaggcttatctggccgcgcgagcgcgaagccactcttgag
ctgctcaagacgctgccgctcaacggcacccgctttggcaagaaagatcagggctatccc
aagctagagaccttgttcgccgccatggataactgggcggctcagccgctctccctgccc
gacagcaaggtactaggggccttggccttaggcgacctcaagctcaacaagggcggcgag
atcccaacgccggagcaggcgccgctgcttgcccatatagagcgcgtcacagaaaccata
gacaccttagtgcccagcttcctctatggcgcccgtgatgggattaagcgccgctttgcg
gcgcagaaacagcttaagaatctgcgcacgccagacgatctgctgatcgccctggccgat
gccctgagcgaagaaaccgaccaggagcaggcgctggcacgggccatcgccaagcgtttc
cctatcgcccttatcgatgagtttcaggacacagatccgctgcaatatcagatcttcagc
cgcatctatcaaggccagcaggtctcgaccgatagcgacctcgggcttctgatgattggc
gatcctaaacaggcgatctacgcctttcgcggcgccgatatccacacctatatccatgcc
aggggccagacggaaaaccactacagcctggacaccaactaccgctccagccaggccatg
gtcgaggcggtcaatcagctgttctcaaggagcgacgatccctttatcagccaggcgatc
ccctttgagctcatcaagccatcgcccaaggcggcagagaagcgcctggtcgagaaggta
tcccaaacgagcgcgctacggcttaagctactcggcgaagatcccaacgccgggctcaat
aaggccagcgcccgcagccagttggccgaagatgccgccaacgagatagccaggctgctc
aacgaggcccagcgcggcgagtgtctgaaacagaataagccactcaaggcaaaagatatc
gcggtgcttgtcagggatcgcaacgaggccgcctatatcaaatcggcgctgagtgcccgg
gggataggcgccgtctttctcagccgcgacagcgtattcgataccctggtggccaaggaa
ctcgccctggtgctacttgccatcgccaatcccaaagatgagcgcgcgctgcgaagcgcc
atggccacagccctgctgggctatgatgcccaggcgatccatgcctttaacctggatgaa
gatgtgcgtcagcagcagctcgaggccttcgacaacctgcatcacacctggctcaagcgc
gggatcatgccctgcatgatggccttggcggccgatacccacctcatcgagcgtctgctg
actgcagatgaggggcagcgccgcctgaccgatttcaggcacctcggtgaactgctgcaa
caaaaagcgatggagctcgacggcatcagcgccctgctcaactggtatcagcagacgctg
atcgaggtaagcagcacggaagaggcccagctcaggctggagagcgagcagaatctggta
cagatagtcaccatacacaagagtaagggactggaatatcccatctgtttcctgcccttc
gtcagcctggccagagacaatcgccgcaaaccggcgcccatgctctaccacgagcaagac
gccctggtgtgggatatcgaccagagcgacgagggctgggccaaatacaaggcggagaat
ctcgccgaagatctgcgccttctctatgtggcgctcacccgcccggtgctcgcctgctac
tgctatgtcgccaaccattcgcgctttaccaagcgtgacggcatcagcagccagttgttc
gagactgccataggttaccttttgggcatagagaccaaggcctgcgagtttgccgacatt
caggccgccgcccaggcactggcgagcgaggcgatctcggtcgatttggtggaaagcgac
gcgcccaaactagactttgaccctatcgacactaccgatgccgtcaagctggcgccgcgg
ccacttagccgcaggcgcgagatcccctggcgggtgggcagctactctggcctggtgaaa
cactcggctcacgaacagatcagcccaggtatgggtgatgaggcctttcccgaacttgag
cagttagctcccgacagcgagcagctgtcacggttcagcttcgagcgcggcgccaacgcg
gggagtttcctccactgggtgctagagcagatagactttacccaggccgataccagtcta
ggcgatgagctgcccaaggcaatggagcgcttcggtatcgatagcgagtggcaagatatg
ctgcatgcctggtatctggatctgctgcatgtgccgctcgatggtgatgcgctgcgtctt
gcgagcctaagccaggcacagaaactggtggagatggagttttacatgcccataggcaag
ctcgatgcacctgggcttaatcagctgctgaggcagtatggctatagcgccgcactgaat
ttcgagaccctcgaggggatgctcaagggctttatcgacttaaccttcgaataccagggc
aagttctatatcgccgactataagtccaatcatctgggggatcacctgagtcactatgaa
aagcccgccatgctgcgggccatcgcaggtcaccactatgacctgcaatacatcatctat
agcctggcgctgcatcgctacctcaagctacgcctgcccggctaccagtataaccagcat
gtgggcggctgctactacctcttccttaggggcatgtcggccgactcaccgagtaccggc
gtctattacgacaagcctccccttgggctgatccaggccctagacaccctgcttagcgag
gcagaaaccagcaaatctcaagctgagtctcaagctgagcctgagtcgcactcgccaaca
gacaggcaatctgacatgccatcaggcccagcacaaggagagctagacctatga
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