Shewanella spartinae: K0I31_11165
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Entry
K0I31_11165 CDS
T09209
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sspa
Shewanella spartinae
Pathway
sspa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K0I31_11165 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspa03400
]
K0I31_11165 (recD)
Enzymes [BR:
sspa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K0I31_11165 (recD)
DNA repair and recombination proteins [BR:
sspa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K0I31_11165 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
Viral_helicase1
UvrD_C_2
AAA_11
NAT10_TcmA_helicase
SH3_13
AAA_22
UvrD-helicase
PhoH
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Flavi_DEAD
Hex_IIIa
AAA_28
T2SSE
UvrD_C
NTPase_1
TrwB_AAD_bind
SRP54
CbiA
Motif
Other DBs
NCBI-ProteinID:
QYJ92208
LinkDB
All DBs
Position
2510511..2512562
Genome browser
AA seq
683 aa
AA seq
DB search
MIQLAQPLSQLLKHWQQEGLLTPLDRHFALQMQALHSDGDDLFTLICALLSRQLSQQHTC
LPLTQIDRNNPLHEQQPQCQLELSPQALAEQLTQYQAISPADGELNTPLILDGDRLYLQR
YYQFETQVAERLTRLNQPIKVAAPDKVASILNILFAGQAEKPDWQRVATATAFSQKLAVI
TGGPGTGKTTTVTKLLLLLCLEQQLTIKLVAPTGKAAARLSESIKASKARLAQELAPYGD
ELDLEQLKQVPEEAATLHRLLGVIPGSHRFRHHKDNPLRLDLLILDEASMVDLPMMHKLL
AALPEHARLILLGDQDQLASVEAGAVLADICAGLKQAEAQSIASMNIGSLNIGSLNAEIQ
QANGWRMRYSQEKAALLSQLTKEDLSAYIDARPALGDSLAMLMHSHRFKGDAGIGQLAGA
VNRRDLTGILSVWQRGYEELSWLEHQLSPQGDAGLKALMAQSVYKYRPYLDLVCHLANKE
QAQEVDKEADQQLDLDEIANQIITRFNDYRILCAMRAGEYGVEGINAAVTQALKDAQLIQ
PSSEFYAGRPIIIQSNDYNLGLFNGDIGVILPGHGPSHRLMAYFVQADGSLLKVLPARLP
SHETCYAMTVHKSQGSEFQQVAFVLPPRPSVAQRQLLTKELVYTAITRAKGHFSCLGSQA
VFEAACSQATLRASGLAQRLWPA
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgatccagctagcacagccacttagccagctgcttaagcactggcagcaggagggactg
ctgaccccattggatcgccactttgcgctgcagatgcaagccctacatagcgatggcgac
gatctctttaccctgatctgcgccctgctcagccgtcaattgtctcagcaacacacctgt
ctgcccctgacccagatagacaggaataacccgctacatgaacagcagcctcagtgtcag
cttgagctgtcaccccaggcactggccgagcagttgactcaatatcaagccattagcccg
gccgatggtgagctaaacacccccttgatcctcgatggcgacaggctctacctgcagcgt
tactaccagtttgagactcaggtggccgaacgtctcactcgcctcaatcagcccatcaaa
gttgccgcgccagacaaggtagccagcatactgaatattctgtttgccggtcaggccgag
aagcccgattggcagagggtagccaccgccaccgcctttagccagaagctggcggtgatc
accggcggacctggcacgggcaagaccacgactgtgaccaagctgttactgctgctctgc
ctggagcagcaactcaccatcaagttggtggcgccaacgggtaaggcggccgcgcgcctt
agcgaatcgatcaaggcctccaaggcgaggctggcccaggagctggcgccctatggtgat
gagttagatcttgagcaacttaagcaggtgcccgaagaggcggccaccctgcaccgtctg
ctgggggtgatccccggctcccacagattcaggcaccataaggacaatcctctcaggcta
gatctcttgatcctcgatgaggcctccatggtggatctgcccatgatgcacaagctgctg
gccgcgctgccggagcatgccaggctcattttgcttggcgatcaggaccagctcgcctcg
gtcgaggccggcgccgtgctggctgatatctgcgccgggctcaagcaagcagaagctcag
agcattgcctctatgaacattggctctctgaacattggctctctgaacgctgagattcag
caagcaaatggctggcgcatgcgctactcacaagagaaggcagcactcctgagtcagtta
accaaggaagatctcagcgcctatatcgatgcgcgcccggcactgggcgatagtctggcc
atgctgatgcacagccacagatttaagggcgatgccggtatcggccaactagcaggcgcc
gtcaaccgccgcgatctgacgggcatattaagtgtctggcagagaggatacgaagagctt
agctggcttgagcatcaactctcgccccagggcgacgccggactcaaggccttgatggca
cagagcgtctacaaatatcgcccttatcttgacttggtttgtcacctggccaacaaagag
caggctcaagaagtagataaagaggcagatcaacaactggatctggacgaaatcgccaac
cagatcatcactcgcttcaacgactaccgtatcctctgcgccatgcgcgccggcgaatat
ggcgtcgaggggatcaatgcggcggtcacccaggcactgaaggatgcccagctgatccag
ccatccagcgaattttacgctggacgccctatcatcattcagagtaacgactataacctt
gggctgtttaacggtgatatcggggtgatcctgccaggccacggccccagccaccgcctg
atggcctatttcgttcaggccgatggcagcctgctcaaggtgctgcccgcccgcctgccg
agccacgagacctgttacgccatgacggtgcataagagtcagggcagcgagtttcagcag
gtcgccttcgtcttgccgccaaggcctagcgtcgcccagcgtcagttgctcaccaaggag
ttggtctacaccgccatcacccgcgccaagggacactttagctgtcttggcagccaggcg
gtgttcgaggcggcctgcagccaggcgacccttagggcctcgggtctggcccagaggttg
tggccggcatga
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