Shewanella spartinae: K0I31_11445
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Entry
K0I31_11445 CDS
T09209
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sspa
Shewanella spartinae
Brite
KEGG Orthology (KO) [BR:
sspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sspa03016
]
K0I31_11445 (rnd)
Enzymes [BR:
sspa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
K0I31_11445 (rnd)
Transfer RNA biogenesis [BR:
sspa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
K0I31_11445 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DNA_pol_A_exoN
Gag_p30
GED
Motif
Other DBs
NCBI-ProteinID:
QYJ92261
LinkDB
All DBs
Position
complement(2579557..2580663)
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AA seq
368 aa
AA seq
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MTFQYVEDDASLTELVAKYRQAKVLMLDTEFVRTRTYYAKLGLIQVYDGETLALIDPVAV
SDLSAFWALLERDDMISVLHSCSEDLEVLARYGRCQPKVLFDSQIAAAFCGWGHGMGYAK
LVEHCLGVQLDKGESRTDWMKRPLSDAQLQYAANDVDYLYRLYPQLLEKLQESGRMPWLL
EEGERMTQGRLESPDGDTAYLKVKNAFQLSPKQLAYLKVLAKWRLQKALDRDLALGFVIK
DHALLALAKKQPKSTGEIFRMTELTEQEKRLHAKAIIAEMAKADLDNLPEAIDVIALKPG
YKSAFKAIKQALTQVAESHQVPMELLGSKRHIHEYLQWRWNDGQGEMPLVLQGWRGELSQ
AALAEISC
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
ttgacctttcaatatgtagaggatgacgccagcctaacagagctggtggctaaatatcgt
caggctaaggtcctgatgttggataccgaattcgttcgcacccgcacctattacgccaag
ctgggactgatccaggtctatgacggcgagacactggcgctgatcgatcctgttgcggta
agcgatctctctgcattttgggccctgctggagcgcgacgatatgattagcgtgctgcat
tcttgcagcgaagatctcgaagtcttggcccgttacggtcgctgtcagcctaaggtgctg
ttcgacagccagatcgccgccgccttctgcggctggggtcatggcatgggctacgccaag
ctggtggagcactgcctgggcgtgcagctggataagggcgagtcgcgcaccgactggatg
aaacgtccgctcagcgatgcccagctgcagtatgcggccaacgatgtggattatctctat
cggctctatcctcagctgctagaaaagctgcaagagtctggcagaatgccttggctgctg
gaagagggcgagcgcatgacccaggggcgtctggagagcccggatggtgacaccgcctat
ctcaaggtgaagaacgccttccagctaagccctaaacaactggcctatctgaaggtgctg
gccaagtggcgcctacagaaggcgctggacagagacttggccctgggcttcgtcatcaaa
gatcacgcgctgctggcgctggccaagaagcagcccaagagtacaggcgagatcttcagg
atgacagagctgaccgagcaggagaagcgtctgcatgccaaggcgatcatcgccgagatg
gccaaggcggatctggataacctgcccgaagctatcgatgtgatcgccctgaaacctggc
tacaagtcggccttcaaggcgatcaaacaggcgctaacccaggtggcggaatcccatcag
gtgccgatggagctgctgggctctaagcgtcatattcatgaatacctgcaatggcgctgg
aatgatggccagggcgagatgcctttggtgttacagggctggcgcggtgagttgagtcag
gctgccttggccgagatcagctgttaa
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