Shewanella spartinae: K0I31_11630
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Entry
K0I31_11630 CDS
T09209
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sspa
Shewanella spartinae
Brite
KEGG Orthology (KO) [BR:
sspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sspa03032
]
K0I31_11630 (topA)
03400 DNA repair and recombination proteins [BR:
sspa03400
]
K0I31_11630 (topA)
Enzymes [BR:
sspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K0I31_11630 (topA)
DNA replication proteins [BR:
sspa03032
]
Prokaryotic type
DNA Topoisomerases
K0I31_11630 (topA)
DNA repair and recombination proteins [BR:
sspa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K0I31_11630 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
QYJ92295
LinkDB
All DBs
Position
complement(2628596..2631244)
Genome browser
AA seq
882 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDYIVKSSVGHIRDLPTSSTSDASSSTKSPAEVRKMSP
EEKAKYKAEKAKKALVARMGVDPERGWKAKYQTLPGKEKVVKELQSLAENADHIFLATDL
DREGEAIAWHLQEVIGGDPERYQRVVFNEITKSAIQEAFSHPSQLNTNMVNAQQARRFLD
RVVGFMVSPLLWKKVARGLSAGRVQSVATRLVVEREGEIKAFVPEEFWDIHAELTTLSNE
GIKMQVAKFKGDNFNPVNEAQAMVAVNALKDSKYQVTSREVKATSSKPSAPFITSTLQQA
ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDSVRDMIGKEYGDKYLPDAP
IRYGSKEGAQEAHEAIRPSDVNVSASSLSDMERDAQRLYELIWRQFVACQMTPAKYDATR
LTVTAGDYELKASGRTLKFDGWTRVQTALKKKNEEENTLPMVAEGDVLALEDLLPKQHFT
KPPARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVKVENRRFYAEKMGEIVSESLI
GSFEELMSYDFTAGMEQTLDNVAQGQLEWKKVLDNFYKGLTAQLEKAELPPEEGGMRPNE
MVLTDIACPTCGRPMGIRTGTTGVFLGCSGYALPPKERCKTTMNLTPGEEAVSENSEDAE
TDALRAKHRCDVCGTAMDSYLIDEKRKLHVCGNNPICGGYEVEQGQFKIKGYEGPIIECD
RCGNDMELKNGRFGKYFGCTNSECKNTRKLLKNGEVAPPKEDPIHLPELKCTKSDGYFVL
RDGAAGIFLAASTFPKSRETRAPLVEELVKYRELLWPKYQYLADAPVTDDDGNKAVVRFS
RKTKEQYVATEIDGKATGWTAKFVGGKWVSEAKAKPKAKKKA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctagttattgtcgaatcaccggccaaagccaagactattaacaaatat
ctcggcaaagattacatcgtaaaatcgagtgtaggtcacatccgtgatcttcctacctca
tccaccagtgacgccagttcgtcgactaaatcgcccgccgaagtgcgcaagatgtccccc
gaagagaaggctaaatataaggcagagaaagcgaagaaagccctggttgcgcggatgggc
gtcgatccagagcgaggctggaaggctaagtatcaaaccttgcctggcaaagagaaagtc
gtcaaagaattacagtcacttgctgaaaatgcagatcatatcttcctcgcaaccgatttg
gatagagagggggaggcaattgcatggcatcttcaagaagtgattggtggggatccagag
cgctatcagcgcgtggtctttaacgagatcactaagagcgcgattcaagaggcgttcagc
catccgtcgcagctcaacaccaatatggttaatgcccagcaggcgagacgttttctcgac
cgcgtagtgggtttcatggtgtcacccttgttgtggaagaaagtggcccgtggcctatct
gcaggacgtgtgcaatcggtagcgacgcgtttggtggtcgagcgtgaaggcgagatcaag
gcgttcgtaccagaagaattctgggacattcatgccgagctgacgaccttgagcaacgaa
gggatcaagatgcaggtggctaagtttaagggtgataactttaaccctgtaaacgaagct
caggccatggtggcggttaacgcactaaaagacagcaagtatcaggtcactagccgtgaa
gtcaaagcgacttctagcaagccatcggcgccctttatcacctcgacccttcagcaggcg
gccagtacccgtctcggctttggggtgaagaagaccatgatgatggctcagcgtctctat
gaagcgggtcatatcacctatatgcgtacggactcgactaatctgagtcaggaagccctc
gacagtgtgcgtgacatgatcggcaaggagtatggcgataagtacttgcccgatgcaccg
atccgttatggcagcaaagagggagcccaggaggctcacgaagcgattcgtccgtctgat
gtgaacgtcagtgccagcagccttagcgatatggaaagagatgcccagcgtctctacgag
ttgatctggcgccaattcgttgcctgtcagatgaccccagcgaaatacgatgctacgcgt
ttgaccgtgaccgcaggggattacgaactcaaggccagtggccgtacccttaagtttgac
ggttggactcgggttcagaccgcgcttaagaagaaaaatgaggaagagaacaccctgccg
atggttgccgagggtgatgtgctggcgttagaagatttgttacctaagcagcatttcact
aaaccacccgcgcgttacagcgaagcatcgctggtgaaagagctcgagaagcgcggcatc
ggtcgtccgtcgacctatgcgaccatcatctcgaccattcaagaccgtggctatgtgaag
gtcgagaatcgtcgtttctacgccgagaagatgggtgagatcgttagcgagagcctcatc
ggcagcttcgaagagctgatgagttacgacttcaccgccggcatggagcagaccctggat
aacgtggcccagggccagctcgagtggaagaaggtgttggataacttctataaaggtttg
accgctcagcttgaaaaggccgagctaccgccggaagagggcggcatgcgccctaacgag
atggtgctgaccgatatcgcctgtccgacttgtggacgcccaatggggattcgcaccggt
actaccggcgtgttcttgggctgttcaggctatgctctgccgccgaaagagcgctgtaag
acgaccatgaacctgacgccgggtgaagaggccgtcagcgaaaacagcgaagatgccgaa
accgatgcactgcgcgccaagcacagatgtgatgtttgcggcacggcgatggacagctat
cttatcgatgagaagcgcaagctgcatgtgtgtggtaacaaccctatctgcggcggctac
gaagtcgagcaagggcagtttaagatcaagggttacgaagggccgattatcgaatgcgat
cgctgtggcaacgatatggagctgaagaatggccgttttggtaagtattttggctgtact
aacagcgagtgtaagaatactcgtaaactgttgaaaaatggtgaagtggctccgccaaag
gaagatccaatccacctgccagagctgaaatgcaccaagtctgatggctatttcgtgcta
agagacggcgccgcaggcatcttcctggccgcgagcaccttccctaaatcccgtgaaacc
cgcgcgcctttagtggaagagctggtgaagtaccgtgagctcttatggcccaagtatcaa
tatctggccgatgcccctgtaacggacgatgacggtaataaggcagttgtgcgctttagc
cgtaagaccaaggagcagtatgtggcaaccgaaatcgacggtaaggcgaccggttggacg
gccaagtttgtcggcggtaagtgggtcagcgaagccaaggctaagccaaaggctaagaag
aaagcctaa
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