Shewanella spartinae: K0I31_12210
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Entry
K0I31_12210 CDS
T09209
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02481
two-component system, NtrC family, response regulator
Organism
sspa
Shewanella spartinae
Brite
KEGG Orthology (KO) [BR:
sspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
sspa02022
]
K0I31_12210
Two-component system [BR:
sspa02022
]
NtrC family
Unclassified
K0I31_12210
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA
AAA_16
HTH_50
AAA_5
AAA_2
HTH_30
nSTAND1
nSTAND3
DUF6507
Motif
Other DBs
NCBI-ProteinID:
QYJ95838
LinkDB
All DBs
Position
complement(2766290..2767642)
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AA seq
450 aa
AA seq
DB search
MEQPKLHILVVEDEPDQRALIVQMLTANQYLVESADSVEQAIVMIKASAPDLVFSDWKLG
QLTGMDLLNYVRREHPDMGFIIATAYGTITHAVDAMQAGADDYLAKPYQRQSLLLAIEKV
AKSIALKRQNRRLSSELSQQQELVGLVGRSSLMQKVYQRVQRVSATDATVLIGGESGTGK
ELAARALYQLSGRSHKPFVAINCGAIPESLAEAELFGAEKGAYTGANTQKIGKLEAADGG
TVFLDEIGELPLLQQTKLLRFLQEGVISRLGQNSEIKLDVRVIAATHRDLQQEVAEGRFR
EDLYYRLNVVPIHMPALRERPEDIGRLVEHFLKLHANQYGMEVPKLSRDTLKSLLDHSWP
GNVRELANRIERFVLLGDEDEMVQELGAAPQPLDTRRFVLPEAGIEWESFEKDCLRQALD
RFEGNRTKAAKCLGLSYKAFLYRLEKYQLV
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggagcagcctaagttgcatattttggtggtagaggatgagccggatcagagagcattg
atcgtgcagatgttgacggccaaccagtatttggtggagagcgccgacagcgtcgagcag
gcgatcgtgatgattaaggcatctgcgccggatctggtgttttccgactggaagttggga
cagttaaccggcatggatctgcttaactatgtgcgccgcgaacacccggatatgggcttt
atcatcgccaccgcctacggcaccatcactcacgcggtagacgccatgcaggcgggggca
gacgactatctggccaagccctatcagcgccagagtctattgttggccatcgaaaaggtg
gccaagtctattgcgctgaagcggcagaaccgccgcctctcttccgagctgtctcagcag
caggagctggtggggctggtggggcgctcttccctgatgcagaaggtgtatcagagggta
cagcgggtgagcgccacagatgcaaccgtgctgattggcggcgagagtggcacgggcaag
gagctggcggcgcgggcgctttaccagctgtcgggccgtagccataaacccttcgtcgcc
atcaactgcggcgcgatccccgagtccctggccgaggctgagctgttcggcgccgagaag
ggggcctatacgggggccaatacccagaagataggtaagttggaggcggccgatggcggc
accgtctttctcgacgagataggcgagctgcccctgctgcaacagaccaagctgctgcgt
ttcttgcaagagggggtgatatcccgcctcgggcagaacagcgagatcaagctggatgtc
agggtgatcgccgcgacccatagggatctgcagcaggaggtggccgaggggcgttttcgc
gaggatctctattaccgcctcaacgtggtgcctatccatatgccggcgcttagggagcga
cccgaggatatcggccgactggtggagcactttcttaaactccacgccaatcaatatggc
atggaggtgcccaagctaagccgggataccttaaagtcgctgctggatcatagctggccg
ggtaacgtgcgcgagctggcgaatcgcatcgaacgtttcgtgttactcggcgatgaagat
gagatggtgcaggaactcggcgccgcgccgcagccgctggataccaggcgttttgtcttg
cccgaggcgggtatcgagtgggagagtttcgagaaagattgcctgcgccaggccctggac
cgtttcgaaggtaatcgtaccaaggccgccaagtgtttaggcctgagctacaaggccttt
ctctatcggctggagaaatatcagctggtctag
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