Shewanella spartinae: K0I31_12805
Help
Entry
K0I31_12805 CDS
T09209
Name
(GenBank) SMC family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
sspa
Shewanella spartinae
Brite
KEGG Orthology (KO) [BR:
sspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspa03400
]
K0I31_12805
DNA repair and recombination proteins [BR:
sspa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K0I31_12805
Archaeal homologous recombinant proteins
K0I31_12805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_27
SMC_N
AAA_29
GTP_EFTU
AAA_21
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QYJ92508
LinkDB
All DBs
Position
complement(2918658..2921714)
Genome browser
AA seq
1018 aa
AA seq
DB search
MRPLRLTMTAFGPFADEQIIDFAALGSNPLFLINGPTGAGKTTILDAICFALYGKTTGDE
REGTQMRCDMADEQRLTQVSFEFELGSTRYLIRRVPEQPRAKKSGDGVTLQKSEAQLSRV
DTDGSETLLVAAKVSDATAQIEQLTGLDVDQFRQVMVLPQGKFRELLMADSKAREKIFSQ
LFQTHIYRRIEERLKQQAAGIRRDVEAMRNRRGGILEGAELASDQALIEEQALIAPELEL
AQAHKQQAEQALLTANQNLDKGLKLQSDFNRLQALQSEGEGLKARQVEAILWQQRLQAAG
RANSLSPLYRAMQSRLGEQRSASQHLGECQQMQASAEQALNQSQQAFEQLGALEQEQLSQ
QQRLTQLEALAPQLEQLNQLSERLADGQAKMQAAETSGKQSAKQLDELNQARQEMVSRRE
TLKRDAEPQLALQQSLSDGRAQLKVFERWQQQGLEIAALEQKLLAAKRAGSELAEKHKQA
IDAHKRLELSWHRGQAARLAAELSPGEPCPVCGSLEHPEPAMGEFDLPSDEALAQAKQLE
SDALNLLHQARSEYKLLQQSLSNLQLSASQLQEELGEAAGLSFDEHQARLAALSDGLERA
KAAQQSLAQLETQLEISEHQGRELQTALDEARAHYGKLAEQLASDKGQYQQIRAAIPQGF
SDLATLSTAIADLTKTIDELKSRQQAVRAAHAKAEQDNAAAKASLEAASRRIGEVNALAE
QETLSFQQALATSEFESVAAFEQACLTEAEQAELSNQIKAFEQALITHQANLSQLQETLA
DCEAPDMSALEQQKMDAEQVMQQALAQWQKVSARAAQLSQTQEQLKALDLKAGALEQQYA
VVGTLADVANGNTGNKISLQRFVLSVLLDDVLLEASHRLQLMSKGRYRLLRKEERAKGNK
ASGLELEVEDAYTAKVRSVATLSGGESFMAALSMALGLSDVVQAYAGGIKLDTLFIDEGF
GSLDQDSLELAIRTLMDLQSAGRMVGVISHVTEMKEQIASRIDILKSAEGSEIKLVLP
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgagaccactgcgactgaccatgaccgccttcggccccttcgccgacgagcagatcata
gattttgccgccctgggcagtaacccgctgtttctaatcaacggccccacgggggcgggt
aagacgacgattctcgatgccatctgtttcgccctctatggcaagaccacgggggatgag
cgcgaaggcacccagatgcgctgcgacatggccgatgagcagaggctgactcaggtcagc
ttcgagtttgagctgggcagcacgcgttatcttattcgccgcgtgcccgagcagccaagg
gccaagaagagtggtgatggggtgacgctgcaaaagagcgaggcccagctgtctcgcgtc
gacacggatggcagcgagacattgctggtggcggccaaggtgtctgatgcaaccgcgcag
atagagcagctgaccggcctggatgtggatcagttccgccaggtaatggtgctgccccag
ggcaagtttcgcgagctcttgatggccgactctaaggccagggagaagatcttcagccag
ctgtttcagacccatatctatcgccgtatcgaggagcgcctcaagcagcaggcggccgga
attcgccgcgacgtcgaggcgatgcgcaatcgccgcggcggcattctggagggcgccgag
ttagcaagtgatcaggcacttatcgaggagcaggcgctcatcgcccccgagctggaactt
gcccaagcgcacaagcagcaagccgagcaggcactgctgacggccaaccagaatctggac
aagggcctcaagctgcagagtgatttcaatcgcctgcaggcgctgcaaagcgagggcgag
gggcttaaggcccgccaggtggaggcgattttgtggcaacagagactgcaggcggccggt
cgagccaatagcctgagccccctttaccgggcgatgcagtcgcgcctcggcgagcagcgc
tcggcaagccagcacttaggtgagtgtcagcagatgcaagcaagcgccgagcaggcattg
aatcagagccagcaggccttcgagcagctgggcgcgctcgagcaagagcaactgagccag
cagcagcgcctgacccagcttgaggcgctagcgcctcagcttgaacagctcaatcaattg
agtgagcgactcgccgatggtcaggccaagatgcaggcagccgagacgagtggtaagcag
agcgccaaacagttagacgagcttaaccaggcccgccaggagatggtgagtcgccgcgag
acccttaaacgtgacgccgagccgcagctcgcgttgcaacaatccctgagcgacggccgc
gcccagctcaaggtgtttgagcgctggcagcagcaggggctggagatcgcggccctcgag
cagaagttattggcggctaagagagcaggcagtgagcttgccgaaaagcacaagcaggcg
atcgatgcccataagcgtctggagcttagctggcatcgcggtcaggcggcgcgcctggcg
gcagagttatcaccgggcgagccttgccccgtctgcggcagcctggaacacccagagcct
gccatgggcgaatttgacctgccgagcgacgaggcgctggcccaggccaagcagctagag
agcgacgcgctcaatctgctgcatcaggccagaagcgagtataagctgctccagcaatct
ctgtcgaacctgcagctaagcgcatctcagctacaagaggagcttggcgaggcggcaggc
ttgtcgtttgatgagcatcaggcgcgactcgcagcgcttagcgacgggttagagcgggcc
aaggcggcgcagcaatcacttgcccagttagagactcagcttgagataagcgagcaccag
ggacgagagctacaaaccgcgctggatgaagcgcgtgcccactacggtaaactggccgag
cagctggccagcgacaaggggcagtatcagcagataagagcggctattccccagggcttt
agcgacctagccacgctcagcacggccattgccgatcttaccaagactatcgatgagctt
aagtcgcgccagcaggcggtgagggcggcccatgccaaggcggagcaggataatgcggcg
gccaaggcctcgctggaggcggcgagccgccgtattggtgaggtgaatgctcttgcggag
caggagaccctgagtttccaacaggcgctagcgacttcggaatttgaaagtgttgccgcc
ttcgagcaggcctgcctgaccgaggccgagcaggccgagttgtccaatcagatcaaggcg
ttcgagcaggcgcttatcactcatcaggccaacctgtctcagctccaagagaccttagcc
gattgtgaggcgccggatatgagtgcactcgagcagcaaaaaatggacgccgagcaggtg
atgcagcaggccttggctcagtggcaaaaggtgagcgccagggcggctcagctaagtcaa
acccaggagcagctcaaggcgctggatcttaaggccggcgctctcgagcagcaatacgcc
gtggtcggcaccctggccgatgtggccaatggcaacacgggtaacaagataagcctgcaa
cgtttcgtgctgagcgtattgctggacgatgtcttgctggaagccagccacagattgcag
ctgatgagtaaggggcgctatcgcttgctgcgcaaggaggagagggccaagggtaacaag
gcctctggccttgagctggaggtggaagatgcttacaccgccaaggtgcgttcagtggcg
accctgagtggcggcgaaagctttatggcggccctgtctatggcccttgggctgtcggat
gtggtgcaggcctatgctggcggcattaagctcgataccctgtttatcgacgagggcttc
ggtagcctggatcaggactctctcgagcttgccatcagaaccttgatggatctgcaatcg
gccggtcgcatggtgggggtgatctcccacgtgaccgagatgaaagagcagatcgctagc
cgcatcgatatccttaagagtgccgagggtagcgagattaaattagttttaccttaa
DBGET
integrated database retrieval system
