Shewanella spartinae: K0I31_13630
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Entry
K0I31_13630 CDS
T09209
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sspa
Shewanella spartinae
Pathway
sspa03030
DNA replication
sspa03430
Mismatch repair
sspa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0I31_13630 (dnaE)
03430 Mismatch repair
K0I31_13630 (dnaE)
03440 Homologous recombination
K0I31_13630 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sspa03032
]
K0I31_13630 (dnaE)
03400 DNA repair and recombination proteins [BR:
sspa03400
]
K0I31_13630 (dnaE)
Enzymes [BR:
sspa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K0I31_13630 (dnaE)
DNA replication proteins [BR:
sspa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K0I31_13630 (dnaE)
DNA repair and recombination proteins [BR:
sspa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K0I31_13630 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QYJ92659
LinkDB
All DBs
Position
complement(3121899..3125372)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSEPRFVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGA
GIKPIVGCDFFMLVPGFEDEFCSLTVLAMNNEGYKNLTLLISDAYLRGHVKDRAVIDQAW
LERYSEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDRYYLELIRTGRPDEER
YLHMAVELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTLADPRRPRRYSEQQYF
RSQDEMCKLFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDLSIEDFLVEVSKKGL
EERLEFLFPDEAQRAERRGEYDERLDVELTVINNMGFPGYFLIVMEFIQWGKDNGIPIGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKMIPAEPGMTLAKAFEAEPA
LPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGVVIAPTVITDFAPLYCDAEGHNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPHLAKQGKEPVRIEAIVLDDPASFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDQQWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPA
QFMAAVMSADMDNTDKIVTLVDECERMGLPLLPPDVNKGLFRFTVDDDLNIVYGIGAIKG
VGEGPVESILKAREDGPFVDLFDFCARVDLKKLNRRVIEKLICAGALDNLGPHRAAMMAT
LPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDNKQQFVHCTPWPDKVWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTERGKTTKAAGLVVATRVMMTKRGSKMGLVTLDDK
SARLEVMLFTEAFEKFGELLEKDRILIVEGEVSFDDFSGGNRMTARNIIDMGEARSHFAH
AVEVDLDGTSITPEWLGQFQQAVEPWKAGSVPLVINYAQPTAKAQFRLGDEWRVNPTDEL
MLALETLTGSDKVRILF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaacctcgtttcgtgcacctgcgcgtacacagtgatttttccatgtctgatggc
ctcgccaaggtcaagcccattctcgccaaggccagtgaagatcagatggctgcactggcc
ctgaccgacaacaccaacctctgcggtctggtgaagttttatggcggctgtcacggtgcg
gggatcaagcccatcgtaggttgtgacttcttcatgctggtgccgggtttcgaggatgaa
ttctgctccctgactgtgctggcgatgaacaacgagggatataagaaccttaccctgctg
atcagcgatgcctacctgcgtggccatgtaaaagacagggcggtgatcgaccaggcctgg
ctggagcgctacagcgaagggctgatcctgctatccggcgccaaagatggcgacgtgggc
aaggcgctgctcaaggggaaccagggccaggtggactctctggtcgccttctatcagacc
cacttccccgaccgttattatctcgagcttatccgcaccgggcgccccgacgaggagcgt
tatctgcatatggcagttgagctggcgggcgagaaagacctgcccgtggtcgccaccaat
caggtggtgttcatacagcctgagcagttcgaagcccatgagatccgcgtggccatctcg
gatggtttcaccctggcggacccaaggcggccgcgccgctacagcgagcagcaatatttc
cgcagccaggatgagatgtgtaagctatttgacgatatccccgaggcgctgcaaaacagt
gtggagatcgccaagcgctgtaacgtcacagtgagactcggtgaatacttcctgccgaac
ttccccaccggcgatctctccatcgaagattttctggtcgaggtctccaagaagggcctg
gaggagcgtctcgagttcctctttcccgatgaggcacagcgcgccgagcgccgcggtgag
tatgacgagcgtctcgatgtcgagctgacggtaattaataacatgggattccccggctac
ttcctcatcgtgatggagtttatccagtgggggaaagacaacggtatccctatcggtcca
ggccgtggttcgggggcgggttctctggtggcttatgcccttaagatcaccgacctggat
ccgctggaatttgacctgctgttcgaacgtttccttaacccagaacgtgtttccatgccc
gacttcgacgtcgacttctgcatggacagacgcgacgaggtgatcgatcacgtggccgaa
ctctatggccgcgacgccgtgtcgcagatcatcacctttggtaccatggcggctaaggcc
gtggtgcgtgacgtgggccgtgtactgggtcacccctatggcttcgtcgaccgtatctct
aagatgatcccggccgagcccggcatgaccctggccaaggcgttcgaggccgagccggca
ctgcccgaggcctatgacgccgacgaagaggtgaaagatctcatcgacatgtgccgggtg
ctggaaggggtcacccgtaacgcgggtaaacacgccgggggcgtggtgatcgcgccgacg
gtgatcaccgattttgcgccgctctactgtgatgccgaagggcacaacccggttacccag
ttcgataagaacgacgtggaaaccgccggtctggtgaagttcgactttctgggtctgagg
accctgaccatcatcgactgggcgctgcagatgatcaatccgcatcttgcgaagcagggc
aaagagcctgtgcgtatcgaggcgatcgttttggacgacccggcttcattccgtctgctg
cagcgttatgaaaccaccgccgtgttccagctggaatcccgcggcatgaaagatctgatt
aagcgcctacagcctgactgcttcgaggatatgatcgcactggtggccctgttccgtccc
gggccgctgcagtcgggcatggtagataacttcatcgagcgtaagcacggtcgtgaagag
gtttcttatcccgatcagcagtggcaacacgagagccttaagccgattctggagcccacc
tacggcatcattctctaccaggaacaggtgatgcagatcgcccaggtactggcgggctat
accctgggcggcgcggacatgctgcgtcgtgctatgggtaagaagaaacccgaagagatg
gccaagcagcgtagtgtcttcgaagagggcgctgtgaagaacggcgtcgacggcgagctg
gcgatgaagatcttcgacttggtggaaaagtttgccggttacggcttcaacaagtcgcac
tcggccgcctacgccttggtgtcctaccagaccctctggctcaagacccatttcccggcg
cagtttatggcggcggtgatgtcggcggatatggacaacacagacaagatcgtgaccctg
gtggacgagtgtgagcgcatgggcttgccgctgttgccgccggacgtcaacaagggcctg
ttccgcttcacggtagatgacgacctcaacatcgtctatggcatcggtgccatcaaaggc
gtgggtgaaggcccggtggaatcgattctgaaggcgcgggaggatgggccattcgtggac
ctgttcgacttctgcgcccgggtcgatctcaagaagctaaaccgcagggttatcgagaaa
ctgatctgcgccggcgccttggataacctgggaccgcaccgcgccgccatgatggcgact
ctgcctgaggcaattcgcgccgccgatcagcatgccaaggccgaggcgattggtcagcac
gacatgtttggcctgctcaacagcgagccggaagacaacaagcagcagtttgtgcactgt
acaccttggcccgataaggtgtggctcgagggcgaacgggagaccttgggtctgtacctc
accggtcacccgattaatcagtacctcaaggagctcaagcactacacctcgggtaggctc
aaggatgtgcatcccaccgagcggggcaagaccaccaaggccgccgggctcgtggtggcg
acccgtgtgatgatgactaaacgcggctccaagatgggcctggtcaccctggacgacaag
agtgcgcgtttggaggtgatgctgtttaccgaggcctttgagaaatttggtgagctgctg
gagaaagacaggatcttgatcgtcgaaggggaggtgagtttcgatgacttctccggcggc
aatcgcatgacggcccgcaacatcatcgacatgggtgaggcgcgcagccacttcgcccac
gcggtcgaggtggatctggatggcaccagtatcacaccagagtggctcggccagttccaa
caagctgtcgagccctggaaggcgggcagtgtgcccttggtgatcaactatgctcagccc
accgccaaggcccagtttaggctgggggatgaatggcgggtcaacccgaccgacgagctg
atgctggcactggagacactgaccggctctgacaaggtaaggatcctcttctag
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