Shewanella spartinae: K0I31_16275
Help
Entry
K0I31_16275 CDS
T09209
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
sspa
Shewanella spartinae
Pathway
sspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I31_16275 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspa03019
]
K0I31_16275 (pcnB)
Enzymes [BR:
sspa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
K0I31_16275 (pcnB)
Messenger RNA biogenesis [BR:
sspa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K0I31_16275 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
QYJ93136
LinkDB
All DBs
Position
3753131..3754573
Genome browser
AA seq
480 aa
AA seq
DB search
MSYDSGLILTLTQDPSSRCPIFRRISQFCKQLFEDNQNTTETTPAGLSLEIVARKHHAIS
RQHISENAIKVLYRLHKSGFKAYLVGGGVRDILLGLEPKDFDVVTNATPEEIKKLFRNCR
LVGRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKVNAEGRLLRDNVYGTIDEDAERRD
FTVNALYYDISDFSIHSYGGGLQDLESRTLRLIGDPQKRYREDPVRMLRAVRFATKLGMN
IDKAAAQPIPELAPLLKDIPAARMYEEVLKLFFAGQAQNNYVMMRDFGLFAPLFPLVDNL
LEEDPKGPSHKMVKAIMRNTDERVEQDKSVTPAFFYAAMLWYPLSQRADDIALESGLSQY
DAFYAAMGDVMEQQCRTISIPRRFSTPAKDIWQLQLRFERNQGTRAFKFIEHPKFRAAYD
LLLLRAEAEGGNLAKTAAWWKSFVEGSEEQRSVIARSTNKGSRSRNNRRRRSPKKTPKAE
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
ttgagttatgatagcggcctaattttaaccctgactcaagatccaagttcgaggtgtcct
atttttcgccgtattagtcaattctgtaagcagctttttgaagacaatcaaaacaccaca
gaaaccacaccagcgggactaagcctagagatagttgcacgtaaacatcatgcaatctct
cgccagcacattagcgaaaacgctattaaggtactctatcgtctgcacaaatctggcttt
aaagcctatttggtgggcggcggcgtgcgcgacatcctcctaggactcgagcccaaggat
ttcgacgtggtcaccaatgccacgccggaagagatcaagaagctatttcgtaactgccgc
ctggtagggcgcagattccgtctggcccatatcgtcttcggccgcgatgtcatcgaagtc
gccaccctgaggggccatcatgtagacagcggcgagaagatctctaaggtcaacgccgag
ggtcgcctgctgcgcgacaacgtctacggcactatagatgaagacgccgagcgccgcgac
ttcacggtcaacgccctctactatgatatcagcgacttctccatccacagctatggtggc
ggcctgcaggatctcgagtctcgcaccctgcgtctgatcggcgacccgcagaaacgctac
cgcgaagatcccgtgcgcatgctgcgcgccgtacgcttcgccactaagctgggaatgaac
atagacaaagccgcggcgcagccgatccccgagctggcgcccctgctaaaagatattcca
gccgcccgtatgtatgaagaggtactcaagctcttcttcgccggtcaggcccagaacaac
tacgtcatgatgcgtgactttggcctgttcgcccctctctttcccctggtggataacctg
ctggaggaagaccctaagggaccgagccacaagatggtcaaggcgatcatgcgcaacaca
gacgagcgagttgaacaagacaagtcggtcaccccggccttcttctacgccgccatgctc
tggtaccccctcagccagcgcgccgatgatatcgccctggagagtggcctgagccaatat
gacgccttctacgccgccatgggcgatgtgatggaacagcaatgccgcaccatcagcatt
ccccgtcgctttagcactccggccaaggatatctggcagctgcaactaaggttcgaacgc
aaccagggcacacgtgccttcaagttcatcgagcatcctaagttccgcgccgcctatgac
ctgctactgctaagggccgaagccgaaggtggtaacctggccaagacggccgcctggtgg
aagagcttcgtcgaaggtagcgaagagcagcgcagcgtcatcgcccgcagcaccaacaag
ggtagccgcagccgcaacaatcgccgtcgtcgcagcccgaagaagacacctaaagccgaa
taa
DBGET
integrated database retrieval system
