Streptomyces spectabilis: CP982_20725
Help
Entry
CP982_20725 CDS
T07323
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sspb
Streptomyces spectabilis
Brite
KEGG Orthology (KO) [BR:
sspb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspb03019
]
CP982_20725 (hrpA)
Enzymes [BR:
sspb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CP982_20725 (hrpA)
Messenger RNA biogenesis [BR:
sspb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CP982_20725 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_16
T2SSE
NACHT
PhoH
AAA_25
ResIII
NTPase_1
AAA_30
DUF6139
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QEV60841
UniProt:
A0A5P2X8S8
LinkDB
All DBs
Position
4768369..4772310
Genome browser
AA seq
1313 aa
AA seq
DB search
MSTQPALTLDALAPRLSELSLRDEHRIGRRLEGARRIRKPEARATVLAEIATDIDQAATR
MAGRADGVPAITYPEQLPVSQKKDAILEAIRDHQVVIVAGETGSGKTTQIPKICLELGRG
VRGLIGHTQPRRIAARTVAERVADELNTPLGEAVGWKVRFTDQVSGGTYVKLMTDGILLA
EIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSRH
FGDAPIVEVSGRTYPVEVRYRPLLEEEGDDPDRDQITAITDAVEELQAEGKGDILVFLSG
EREIRDTADALEKKKYRFTEVLPLYARLSHAEQHRVFQQHTGRRIVLATNVAETSLTVPG
IKYVIDPGTARISRYSHRTKVQRLPIEAISQASANQRKGRCGRTSDGICIRLYSEDDFEA
RPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALDPAQ
KDPRKRLTPQGRKLAQLPVDPRLARMVLEADLNGCVREVMVIAAALSIQDPRERPADKQT
QADQQHARFKDETSDFLAYLNLWRYVREQQKELGSSAFRRMCKREYLNFLRIREWQDIYT
QLHTVAKQMGIQLNDGDAAEKQVHISLLAGLLSHVGMKDVKDGAKNEYLGARSAKFAIFP
GSALFKKPPRFVMSAELVETSRLWARVNARVEPEWVEPLAQHLIKRTYSEPHWEKDQAAV
MAYEKVTLYGVPIVTDRKVNYGRIDPEVSRDLFIRNALVEGDWRTHHKFFADNRKLLTEV
EELEHRARRRDILVDDETLFDFYDQRVPEDVVSGAHFDSWWKKKRHDEPELLDFERSMLI
NEKAGDVSKDDYPDSWRQGQLKFRVTYQFEPGADADGVTVHVPLQVLNQVTDEGFDWQIP
GLREEVVIELIRSLPKPIRRNYVPAPNFAKAFLERAVPLQEPLHVTLARELQRMVGVPVS
PDDFDLTRVPDHLKITFRITDERRRKLAEDKDLQALKLQLKPKARKALSQAAAATAERTG
GATIERTGLTDWSIGTLTRVFETRRAGQPVKAYPALVDDGDTVSVRLFDTEAEQAQAMWK
GTRRLILRNIPVNPAKFAQDRLTNQQKLALSANPHGSMPALFADCATAAADKLIADFGGP
VWDEESYRKLYEKVRAEIVDTTVRTVAQVQQVLAAWQACERRLKSTRSPALLANLKDVRE
QLDAVIKPGFVTEAGIRRLPDLMRYMVAADRRLQQMPANAQRDTTRMEKVREMRDEYAWL
LEQLPGGRPVPQEVLDIRWMIEELRVSYFAHALGTAYPVSDKRIVKAIDAAVP
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcagcccgccctcaccctcgacgccctcgccccccgcctgtcggagctgtcg
ctgcgcgacgagcaccgcatcggccggcggctcgaaggtgcgcgccggatccgcaaaccc
gaagcccgggccaccgtcctcgccgagatcgcgacggacatcgaccaggccgccaccagg
atggcgggccgcgccgacggcgtgcccgcgatcacctaccccgagcagctcccggtcagc
cagaagaaggacgcgatcctggaggcgatccgcgaccaccaggtcgtgatcgtcgcgggt
gagacgggctccggcaagaccacccagatcccgaagatctgtctggagctcggccggggc
gtgcgcggcctcatcggccatacgcagccgcgccgcatcgcggcccgcacggtcgccgag
cgcgtcgccgacgagctgaacacgccgctcggcgaggccgtcggctggaaggtccgcttc
acggaccaggtcagcggcggcacgtacgtgaagctgatgacggacggcatcctgctggcc
gagatccagacggaccgcgagctgcgcgcgtacgacacgatcatcatcgacgaggcccac
gagcgctcgctcaacatcgacttcctgctcggctatctcgcccagctcctgcccaagcgc
ccggacctcaaggtcgtgatcacctccgcgaccatcgaccccgagcgcttctcgcggcac
ttcggcgacgccccgatcgtcgaggtcagcggccgtacgtatccggtggaggtgcgctac
cgcccgctcctggaggaggagggcgacgacccggaccgcgaccagatcacggcgatcacg
gacgcggtcgaggagctccaggccgagggcaagggcgacatcctcgtcttcctctccggc
gagcgcgagatccgcgacacggcggacgcgctggagaagaagaagtaccggttcacggaa
gtcctgccgctgtacgcgcggctctcgcacgcggagcagcaccgcgtcttccagcagcac
accggccgaagaatcgtcctggcgaccaacgtcgccgagacgtccctgaccgtcccgggc
atcaagtacgtgatcgacccgggcacggcccgcatctcgcgctacagccaccgcacgaag
gtgcagcgcctgcccatcgaggcgatcagccaggccagcgccaaccagcgcaagggccgc
tgcggccgtacgtccgacggcatctgcatccgtctgtactccgaggacgacttcgaggcc
cgcccggagttcacggacgcggagatcctgcggacgaacctggcgtcggtcatcctccag
atgaccgcggcgggcctcggcgacatcgagaagttccccttcatcgacccgccggaccac
cgcaacatccgcgacggcgtccagctcctccaggagctcggcgcgctcgacccggcgcag
aaggacccgcgcaagcgcctcaccccgcagggccgcaagctggcgcagctgcccgtggac
ccgcgcctggcccgcatggtcctggaggcggacctgaacggctgtgtgcgcgaggtcatg
gtgatcgccgccgccctgtccatccaggacccgcgcgagcgccccgccgacaagcagacg
caggccgaccagcagcacgcccggttcaaggacgagacgtcggacttcctggcgtacctc
aacctgtggcggtacgtgcgcgagcagcagaaggagctcggctcctccgccttccgccgc
atgtgcaagcgggagtacctgaacttcctgcgcatccgcgagtggcaggacatctacacc
cagctgcacacggtcgccaagcagatgggcatccagctgaacgacggcgacgccgccgag
aagcaggtgcacatctcgctgctcgcggggctgctcagccacgtcggcatgaaggacgtg
aaggacggcgccaagaacgagtacctgggggcgcggagcgccaagttcgcgatcttcccg
ggctcggcgcttttcaagaagccgccgcgcttcgtgatgtccgcggagctggtcgaaacg
tcacgcctgtgggcgcgggtgaacgcgcgcgtcgagccggagtgggtcgaaccgctcgcc
cagcacctgatcaagcgcacgtacagcgagccgcactgggagaaggaccaggcggccgtg
atggcgtacgagaaggtgacgctgtacggcgtcccgatcgtcaccgaccgcaaggtgaac
tacgggcggatcgaccccgaggtctcccgcgacctgttcatccgcaacgcgctcgtcgag
ggcgactggcgcacgcaccacaagttcttcgccgacaaccgcaagctgctcaccgaggtc
gaggagctggagcaccgggcgcggcgccgggacatcctcgtcgacgacgagacgctcttc
gacttctacgaccagcgcgtgcccgaggacgtcgtgtcgggggcgcacttcgactcctgg
tggaagaagaagcgccacgacgagccggagctgctcgacttcgagcggtcgatgctcatc
aacgagaaggcgggggacgtctccaaggacgactaccccgactcgtggcgccaggggcag
ctcaagttccgggtgacgtaccagttcgagccgggcgcggacgcggacggcgtgacggtc
cacgtcccgctgcaggtcctgaaccaggtcacggacgagggcttcgactggcagatcccg
ggcctgcgcgaggaggtcgtgatcgagctgatccgctccctgccgaagccgatccgccgg
aactacgtcccggcgcccaacttcgcgaaggcgttcctggagcgcgcggtgccgctgcag
gagccgctgcacgtcacgctcgcgcgcgagctgcagcggatggtcggggtgccggtctcg
ccggacgacttcgacctgacgcgcgtacccgaccacttgaagatcaccttccggatcacc
gacgagcggcgtcgcaagctcgccgaggacaaggaccttcaggcgctgaagctccagctc
aagccgaaggcccgcaaggccctgtcgcaggcggcggccgcgacggccgagcgcacgggc
ggcgccaccatcgagcgcaccggcctcacggactggagcatcggcaccctgacccgcgtc
ttcgagacacgcagggcgggccagcccgtgaaggcctacccggccctggtcgacgacggc
gacacggtctccgtacgcctcttcgacaccgaggcggagcaggcccaggccatgtggaag
ggaacgcgccgcctcatcctgcgcaacatcccggtgaatccggccaagttcgcccaggac
aggctgaccaaccagcagaagctcgccctgtcggcgaatccgcacggctccatgcccgcc
ctgttcgccgactgcgcgaccgccgccgcggacaagctgatcgcggacttcggcggcccg
gtatgggacgaggagtcgtaccgcaagctctacgagaaggtgcgcgccgagatcgtcgac
acgacggtccgcacggtcgcacaggtccagcaggtcctcgccgcctggcaggcctgtgag
cggcgcctgaagtcgacgagaagccccgcgctgctcgccaacctgaaggacgtacgggag
cagctggacgccgtcatcaagcccggcttcgtcaccgaggcgggcatccgcaggctgccg
gacctgatgcgctacatggtcgccgccgaccgccggctgcagcagatgccggcgaacgcg
cagcgggacaccacgcgcatggagaaggtccgcgagatgcgcgacgagtacgcctggctc
ctggagcagctgccggggggccgcccggtgccgcaggaggtcctggacatccgctggatg
atcgaggagctgcgcgtcagctacttcgcccacgcgctcggcacggcctaccccgtctcg
gacaagcgcatcgtgaaggccatcgacgcggcggtgccgtaa
DBGET
integrated database retrieval system
