Streptomyces spectabilis: CP982_30385
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Entry
CP982_30385 CDS
T07323
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sspb
Streptomyces spectabilis
Pathway
sspb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP982_30385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspb03019
]
CP982_30385
Messenger RNA biogenesis [BR:
sspb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CP982_30385
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QEV62506
UniProt:
A0A5P2XJ19
LinkDB
All DBs
Position
6892323..6894008
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AA seq
561 aa
AA seq
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MSHPHPELGAPPKLPKGGLRVTPLGGLGEIGRNMTVFEYDGRLLIVDCGVLFPEEEQPGI
DLILPDFTSIRDRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGDRERLGPFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDRRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRQVFAGARKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLRVPPGLVVDVKTLDDLPD
HEVVLVCTGSQGEPMAALSRMANRDHQIRIVSGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVPHD
RIVIAEDGVVVDLVEGKAKIVGKVQAGYVYVDGLSVGDVTEPALKDRRILGEEGIISVFV
VVDSTTGKITGGPHIQARGSGIEDGTFGEVVPRIQEVLEKSAQDGVVEPHQLQQLIRRTL
GKWVSDNYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggcgccccgccgaagctcccgaagggcggcctgcgg
gtcaccccgctgggcggcctcggcgagatcggccggaacatgacggtcttcgagtacgac
gggcgtctgctgatcgtcgactgcggagtgctcttccctgaggaggagcagcccggaatc
gacctgatcctgccggacttcacgtccatccgtgaccgcctcgacgacatcgagggcatc
gtgctcacgcacggccacgaggaccacatcggcggtgtccccttcctcctgcgcgagaag
ccggacatcccgctgatcggctccaagctgaccctcgccctgatcgaggcgaagctccag
gagcaccgcatccgcccgtacacgctcgaggtcgccgagggcgaccgggagcgtctcggc
cccttcgactgcgagttcgtcgcggtcaaccactccatcccggacgccctcgcggtcgcg
atccgcacccccgcgggcatggtcgtgcacacgggcgacttcaagatggaccagctgccc
ctcgaccggcgcctgaccgacctgcacgcgttcgcgcggctgagcgaggagggcatcgac
ctcctcctctccgactccacgaacgccgaggtcccgggcttcgtaccgcccgagcgggac
atctcgaacgtcctgcgtcaggtcttcgcgggcgcccgcaagcgcatcatcgtggcgagc
ttcgccagccacgtccaccgcatccagcagattctggacgcggcccacgagtacggccgc
cgggtcgccttcgtcggccgctcgatggtccgcaacatgggtatcgcccgtgacctcggc
tatctgcgggtgccgccgggcctggtcgtggacgtcaagacgctcgacgacctgccggac
cacgaggtcgtcctggtctgcacgggttcgcagggcgagccgatggcggccctgtcccgc
atggccaaccgggaccaccagatccgcatcgtctcgggcgacacggtgatcctggcgtcg
tcgctcatccccggcaacgagaacgcggtctaccgcgtgatcaacggcctcacccgctgg
ggtgcgaacgtcgtccacaagggcaacgccaaggtgcacgtctccggccacgcatcggcg
ggcgagctgctgtacttctacaacatctgcaagcccaagaacctgatgccggtccacggc
gaatggcgccacctgcgcgccaacgccgagctcggtgccctcaccggcgtcccgcacgac
cgcatcgtcatcgccgaggacggcgtcgtcgtcgacctcgtcgagggcaaggccaagatc
gtcggcaaggtccaggcgggctatgtgtacgtggacggcctctcggtcggcgacgtcacc
gagccggcgctcaaggaccgccggatcctcggcgaggagggcatcatctcggtcttcgtc
gtcgtcgactcgacgaccggcaagatcaccggtggcccgcacatccaggctcgtggctcg
ggcatcgaggacgggaccttcggcgaggtcgtcccgaggatccaggaagtcctggagaag
tcggcccaggacggcgtcgtcgaaccgcaccagctgcagcagctcatccgccgcacgctg
ggcaagtgggtgtcggacaactaccgccgccgcccgatgatcctgcccgtcgtcgtcgag
gtctga
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