Schlesneria sphaerica: ACGY09_04125
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Entry
ACGY09_04125 CDS
T11240
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sspe Schlesneria sphaerica
Brite
KEGG Orthology (KO) [BR:
sspe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sspe03016
]
ACGY09_04125
Enzymes [BR:
sspe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACGY09_04125
Transfer RNA biogenesis [BR:
sspe03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACGY09_04125
Prokaryotic type
tRNA splicing ligases
ACGY09_04125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XJS16716
LinkDB
All DBs
Position
1090775..1092160
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AA seq
461 aa
AA seq
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MNTTQLRKLGVSDLCIGAAIEGIQRAVQEDALRGREIKKLISSVLAEPSDFVAHPYFGRL
AREIIEHANFTRPAPIEYQVWGREIDAACHAQMRQSCALPMAVGAAIMPDAHLGYGLPIG
GVLALENAVVPYAVGVDIACRMKLSILDIPTTELDANFYRFKNALDKGTRFGIGSVHERP
QQHAVMDADWTVSRVTRENRDKAWKQLGTSGSGNHFVEFGRLTLEQRDEQLGLEKGEYVA
LLSHSGSRGTGASVCDTYSNIARALLPRQYVDFGRLAWLDLDSEAGQEYWAAMTLMGKYA
AANHDVIHRLVSLIVGGKIIAGVENHHNFAWIENHNGRDVVVHRKGATPAGEGVLGVIPG
SMADPAFVVRGKGNPASLNSASHGAGRRMSRTAAREKYSWRAVQRDLENKGVRVLSAGAD
EVPYAYKNILDVMQDQQDLVETVARFDPLIVKMSDDGRAED
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaacacaacacaacttcgcaaacttggggtctctgacctctgcatcggcgcggccatt
gaaggaattcaacgtgccgtgcaggaagacgcgctgcgcgggcgggaaatcaagaagttg
atcagcagcgtgctggcggagccatcggatttcgtcgcacatccgtacttcggtcggctc
gcccgggaaatcatcgagcacgcgaatttcactcgccccgcccccattgaatatcaagtc
tggggacgggaaatcgatgcggcatgccacgcacagatgcgtcagtcatgtgcactcccc
atggcggtcggcgccgccatcatgcctgacgcgcacttgggttacgggctgccgattggg
ggggttctggcactggaaaatgccgtggtcccttatgccgtcggggtggatatcgcgtgc
cgcatgaagctgtcgatcctcgatattccgacaacggaattggacgccaatttctatcgc
ttcaagaatgccctcgataaagggacacgatttggaattggatccgtccacgagcggcct
cagcagcacgcggtcatggacgctgactggacggtttctcgagtgacgcgcgaaaaccgg
gacaaggcgtggaagcagctcggaacatccgggtccggaaatcattttgtggaatttgga
cgactcacacttgagcaacgagacgaacagttaggactggaaaaaggggagtacgttgcc
ctgctcagccatagcggaagccgcggaaccggtgcgtccgtttgcgatacctacagcaac
atcgctcgagctctattgcctcgccaatacgtcgacttcggtcggctggcatggctggac
ctcgacagtgaagcaggtcaggagtactgggctgcgatgacgttaatggggaaatacgcc
gctgcgaaccacgacgtcatccaccgacttgtttcactcatcgtgggtggaaagatcatt
gctggcgtcgaaaatcaccacaacttcgcgtggatcgagaaccacaacgggcgcgacgtc
gtggtgcaccgtaaaggagccacccccgcgggggaaggtgtattgggagtcatccccggt
tccatggctgatccggcatttgttgtccgtggtaaagggaatccggcgagtctgaattcc
gcttcgcatggcgcgggccgtcgcatgagtcgcaccgcagcacgtgagaaatactcttgg
cgagccgtccagcgagatctggagaacaaaggtgtgcgggttctgtccgcaggagcagac
gaagtcccctacgcctacaagaatatccttgacgtgatgcaggatcagcaggatctggtg
gaaacggtcgcgcgattcgacccgctcatcgtgaaaatgagtgatgatggccgagcggag
gattaa
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