Schlesneria sphaerica: ACGY09_07035
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Entry
ACGY09_07035 CDS
T11240
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sspe Schlesneria sphaerica
Pathway
sspe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACGY09_07035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspe03019
]
ACGY09_07035
03009 Ribosome biogenesis [BR:
sspe03009
]
ACGY09_07035
Enzymes [BR:
sspe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACGY09_07035
Messenger RNA biogenesis [BR:
sspe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACGY09_07035
Ribosome biogenesis [BR:
sspe03009
]
Prokaryotic type
rRNA helicases
ACGY09_07035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XJS17272
LinkDB
All DBs
Position
1901497..1903275
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AA seq
592 aa
AA seq
DB search
MTHKLFSDLGLSPDLLKSIERMGFEQASPIQAEAIPQILTGRDVIGQSQTGSGKTAAFGI
PAVEMADPTNRDVQIVMMCPTRELASQVAEEISKLAHFKKGIRELPIFGGQSYEHQFRGL
KAGPQIVIGTPGRLIDHIKQGTLKLSGVKMIVLDEADRMLDMGFRDDIEKILEAIPSERQ
IVLFSATLPPPIRKIIERFTKDPITVRIEATAMSVPAIEQSYVEVDYRSKTEVLCRLLDL
HDVRYGLVFGFTKIQVDTLTEALTARGYSCDKLHGDMTQPMRERTMKRFRERKIDLLVAT
DVAARGLDVDDLEIVFNYELPHDAEDYVHRIGRTGRAGKSGKAISLVSGREFGRLQQIIR
FTKAKINRVSVPRLEELELKHASRLVESLHNTIQSGEFKPQDKLLEDLIEAGHAPGEIIS
ALMHMLAGESNRAPERIAEDDPRPPRRSHRDHPFDQRDQRGPRGDRDDGPPRMTRPREST
GRGQYDGPPSRVDDSGVWIKFNVGDNAGVSPGDFVGCIANEAGVPRTVIGNIQILQTVSF
VQVAAEAAEQILGAVQGVRLRGRRVQAMPGTPPRRDFRPGRDEGPNRRGNRN
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgacacacaaacttttctccgatctgggcctctcgcccgaccttctcaaatccatcgag
cgaatgggttttgaacaggcctcaccgattcaggctgaggcgatcccacagattctgacc
ggccgggacgtgatcggccaatctcaaaccggttccggtaaaaccgctgccttcggtatc
ccggctgtggaaatggccgaccccaccaatcgtgacgtgcagatcgtgatgatgtgcccg
actcgcgaactggcctcgcaggttgccgaagaaatctcgaaactcgcccacttcaaaaag
ggaatccgcgaactgccgatctttggcggacagagttacgaacatcagtttcgcggactg
aaagcgggcccgcagatcgtcatcgggacacccggccgactgatcgaccatatcaagcaa
ggcacgctgaagctgagcggcgtcaagatgatcgtcctcgacgaagccgatcgcatgctc
gacatgggcttccgcgacgacatcgagaagatcctcgaagcgatccccagcgagcgccag
atcgtcctcttctcagcaaccctgccccctccgatccgcaaaatcatcgaacgctttacg
aaggacccgattacggtccggatcgaagcaaccgcgatgagcgtcccggcgatcgaacag
tcctacgtcgaagtcgactaccgatccaagactgaggtactctgtcgcctgctcgacctg
cacgatgtccgctacggactcgtcttcggattcacaaagatccaggtggatacgcttacc
gaggcgctgacggcgcgcggttacagttgcgacaaactgcatggcgacatgacccagccg
atgcgtgaacgaaccatgaagcggttccgtgaacgtaaaatcgacttgctcgttgcgacc
gacgtcgcagcccgcggcctggatgtggacgatcttgaaatcgtattcaattacgagctg
ccgcatgatgccgaagactacgtacaccgcatcggccggacgggacgcgccggtaaaagc
ggcaaggccatcagcctggtcagtggccgcgaattcggacggttgcagcagatcattcgt
ttcaccaaggcgaagatcaacagagtctcagtcccgcgacttgaagagctcgagctgaaa
catgccagtcgactcgtcgagtccctgcataacacgatccagtcgggcgagttcaagccg
caggacaaactgctggaagacctgatcgaagcagggcacgctcccggcgaaatcatctcc
gccctgatgcacatgctggcgggcgaaagcaaccgagcccccgaacggatcgccgaagac
gacccgcgtcctccccgtcgatcccaccgcgatcatccgttcgatcagcgagaccagcgc
ggacccagaggcgaccgcgacgatggtccgccgcgaatgacccggccacgtgaatcgacc
ggtcgaggccaatacgacgggcctccttcgcgggttgacgattcgggagtctggatcaaa
ttcaatgtcggcgataacgccggggtctcaccgggcgactttgtcggctgcatcgccaac
gaggcgggtgtcccacgtaccgtcatcggaaacattcagatcctccagaccgtcagcttc
gttcaggtcgctgctgaggcggcagagcagattctcggtgccgttcagggagtccgcctg
cgaggaagacgagtccaggccatgcccggcacgccccctcgtcgagacttccgccccggc
cgggacgaaggaccaaaccgccgcggcaatcgcaactag
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