Schlesneria sphaerica: ACGY09_12280
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Entry
ACGY09_12280 CDS
T11240
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sspe Schlesneria sphaerica
Pathway
sspe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACGY09_12280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspe03019
]
ACGY09_12280
03009 Ribosome biogenesis [BR:
sspe03009
]
ACGY09_12280
Enzymes [BR:
sspe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACGY09_12280
Messenger RNA biogenesis [BR:
sspe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACGY09_12280
Ribosome biogenesis [BR:
sspe03009
]
Prokaryotic type
rRNA processing factors
ACGY09_12280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
S-antigen
Motif
Other DBs
NCBI-ProteinID:
XJS18280
LinkDB
All DBs
Position
3363551..3365164
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AA seq
537 aa
AA seq
DB search
MKKEMLMNVLQPEESRIAIVEDGILQELYVERNSLENYVGNIYKGRVVNIEPSIQAAFVD
FGVGRNGFLHVSDVEYQYYKHLVDEKEGEDLGGDDDDDEGRPSRQPRGKFNERSVRNKPP
IQDILKRGSEVLVQVIKGAIGSKGPTLSTYVSIPGRYLVLMPGLQRVGVSRKIADDDARK
RLKRILRDLSPPEGLGFIIRTAGVDRSQADLQRDLNYLLRLWKVIVSRVKKFPAPVDIYE
ESDMITRTIRDIYTSEIDAIWIDEPRAYERACEFMKIVLPRHVDRVKLYDGKEPIFQQYD
IEQEITRIQSRHVPLKGGGSIVIDQTEALVAIDVNSGNFRMDDDAEENAYQVNLRAAEEI
SRQIRLRDLGGVIVNDFIDMREERHRRGVERALHNAVKRDRARTKILHISPFGLIEMTRQ
RIRPSLRRSVYEDCPCCSGTAQVKTAESMAIDVMRLLMSHANRDDVSKVTVEAHERVAAF
LNNRKRKDITQLEETYDVSITVDAKTGVGPEHLKFHCSNATGTEVRILTQSDSKSKS
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaaatgctgatgaatgtcctccaaccggaggaaagtcggattgccatcgtt
gaagatggcatcctgcaagaactttacgttgaacgaaacagcctcgaaaactacgtcgga
aatatctacaaggggcgggtcgtcaatatcgaacccagcatccaggcagccttcgtcgac
ttcggcgtaggacgcaatggatttctgcacgtcagcgatgtcgaataccagtactataag
catctggtcgacgagaaagagggcgaagacctgggtggcgacgacgacgacgacgaaggc
cggccctcacgacagccccgtggcaaattcaacgaacgaagcgtccgcaacaaacccccg
attcaggatatcctcaagcggggaagcgaagtcctcgttcaggtcatcaagggtgccatc
ggatccaagggtcccacactctcgacctatgtcagtatcccaggacgttacctcgttctg
atgcctgggttacagcgagtcggcgtcagccggaagatcgccgatgacgatgcacggaag
cgactgaagcggattctccgcgacctgagcccccccgaaggactgggcttcatcatccgc
acagccggtgttgatcgctcacaggcggacctccagcgcgacctgaactacctgctgcga
ctgtggaaagtcatcgtcagccgcgtcaaaaaattcccggctcccgtcgatatctatgaa
gagagtgacatgatcacccggacaatccgggatatctacacctctgaaatcgacgcgatc
tggatcgacgaaccccgcgcttacgaacgggcgtgcgagttcatgaaaatcgtcctccca
cgacacgtcgaccgagtcaaactgtacgacggcaaagagccgatcttccagcagtacgat
atcgagcaggaaatcacccgcatccagagtcggcatgttccactcaagggcgggggatcg
atcgtcatcgaccagacggaagctcttgttgccattgacgttaacagcggaaacttccgc
atggacgacgacgcggaagagaacgcctaccaggtcaacctgcgagcggcagaagaaatc
agtcgccagatccggcttcgcgatctcggcggcgtgattgtcaacgactttatcgatatg
cgggaagaacggcaccgacgcggggtcgaacgagccctgcacaacgccgtcaagcgagac
cgggcccgaaccaagatcctgcacatcagcccgttcggcctgatcgagatgaccaggcag
cgaattcgaccttcgcttcgccgttctgtctatgaagattgcccctgctgctcgggaaca
gcacaggtcaaaacggccgaaagcatggcaatcgacgtcatgagattactgatgtcacac
gccaatcgtgacgatgtttcgaaagtgacagtcgaagcacacgaacgcgtcgccgccttt
ctgaacaaccggaaacgcaaagatattacgcaactcgaagagacgtacgacgtttcgatc
accgttgatgccaaaacaggggtcggccctgagcaccttaagttccactgttccaatgcg
accgggacggaagtgagaattttgacccagtcagactcgaaatcgaagagctaa
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