Schlesneria sphaerica: ACGY09_12545
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Entry
ACGY09_12545 CDS
T11240
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sspe Schlesneria sphaerica
Pathway
sspe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACGY09_12545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspe03019
]
ACGY09_12545
03009 Ribosome biogenesis [BR:
sspe03009
]
ACGY09_12545
Enzymes [BR:
sspe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACGY09_12545
Messenger RNA biogenesis [BR:
sspe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACGY09_12545
Ribosome biogenesis [BR:
sspe03009
]
Prokaryotic type
rRNA helicases
ACGY09_12545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
XJS18332
LinkDB
All DBs
Position
3443271..3444521
Genome browser
AA seq
416 aa
AA seq
DB search
MIVEMEKAPIRFEDLGLSQDSLFSIKRAGFTLPSAIQAAFIPVAISGVDCIGQARTGTGK
TASFVLPILERIDLEDPRTQALVLTPTRELSQQVADEVERLAYKCKVTTACCVGGRPIHQ
QIRRLQDGSQIVIGTPGRVIDLMGRHILKTDDLSIVVMDEADRMLDIGFRPDIEKILRQC
PEERQTLLLSATLPPPVERLARRYMREPERIDVSATNISHGTIDQYYITVDHHRKFGTLV
RLLLQERPQQAIVFTRTKRGAEEVHRRFAGKLNKMAFIHGDLAQSARDRVMKQFRKGEIR
LLIATDVMGRGIDVSGISHIVNYDIPQDCDDYVHRVGRTGRLSSTEGSGAAITFVAPDEG
QQLTNIEIRINQLLSAYPLTGIDPVESRRVIKHVDEMPPPISRSHEVDEDDFWSIA
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgtcgaaatggagaaggctccaatccggtttgaagatttgggactcagtcaggac
tccctgttctcgattaagagagcaggtttcacattgccgagtgccattcaggccgcattt
atccccgtcgcaatttccggtgttgactgcatcggtcaagcccgcaccggcactggcaaa
acggcttcgtttgttttgccgattcttgaacggatcgatctcgaagatccacgcacccag
gcactcgtcctgaccccgactcgtgaactcagccagcaagtcgctgacgaagtggagcgt
ctggcgtacaagtgcaaagtcacaaccgcctgctgtgtcggaggccgccccatccaccag
cagattcgccggttgcaggatggttcccagattgtgatcggaaccccggggcgggtcatt
gatctgatgggtcgtcatattctgaagacggatgacctgagtatcgtcgtgatggatgaa
gcggaccggatgctggatatcggcttccgtcctgacatcgagaagattttgcgacaatgt
cccgaagagcgccagacgctgcttctgtctgcgacgctgcctcccccggtcgaacgactg
gctcgccgctacatgcgcgaaccagaacggattgacgtatcagcgaccaacatttcgcac
ggaacgatcgaccagtattacatcaccgtcgatcatcaccgaaagttcggcacgcttgtc
cgcctgctgctgcaggaacgcccccagcaagcgatcgttttcaccagaaccaagcggggc
gcagaagaagtccatcggcgttttgcaggcaagctgaacaagatggcctttattcacggc
gacctggcacaaagcgctcgtgaccgcgtgatgaagcagttccgcaaaggagaaatccgc
ctgctgatcgccaccgacgtgatggggcgcgggatcgacgtgagcgggatctcgcacatt
gttaattacgatatcccacaggattgtgatgactacgtccaccgcgtgggacgtacgggc
cggctttcctccaccgaaggaagcggcgcggcgatcaccttcgtcgcgcccgatgaaggt
cagcagttgacgaacatcgaaatccggattaatcagcttctcagtgcatacccactgacc
ggaattgaccctgtcgaatcccgacgtgtgatcaagcacgtggatgaaatgccacctccg
atctcacgctcgcatgaagtcgatgaagacgacttctggtccatcgcctga
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