Schlesneria sphaerica: ACGY09_12965
Help
Entry
ACGY09_12965 CDS
T11240
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sspe Schlesneria sphaerica
Pathway
sspe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sspe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACGY09_12965 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspe03400
]
ACGY09_12965 (ligD)
Enzymes [BR:
sspe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACGY09_12965 (ligD)
DNA repair and recombination proteins [BR:
sspe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACGY09_12965 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
XJS18413
LinkDB
All DBs
Position
3559458..3562148
Genome browser
AA seq
896 aa
AA seq
DB search
MGLTDYQRKRRFDKTPEPPAQTKAGKGWSYVVQKHDASHLHYDFRLELDGVLKSWAVPKG
PSLDTTVKRLAIEVEDHPVDYGTFEGTIPEGEYGGGTVLLWDTGSWEPIGDPEAGLREGK
LKFNLKGKKLKGGWTLVRTRRKGSSSQKPQWLLIKEQDAQARSMDDGDILEEQPLSVSSK
RDLDTIAADADAGKKKQTTKTADIPTSRTRSSSSPKSSKSKRTQASSIPEPDKISVQLAT
LVDEAPEGDEWCHEIKFDGYRILCHIDDGTSRFVTRNHKDWTARLSELARQAAHLKCDQA
ILDGEVVAMSSDGTTDFQSLQNAFRDRGTDQLRYYVFDLLYLDGEDLREQPLQERKQALQ
TLLESTSSHRSIQYSEPIMGRGDVFLKQACKLHLEGIICKRLDQPYRPGRGTDWLKVKCL
KQEEFVIGGFTDPSGSRTGFGALLVGFYDDEQKLHYAGKVGTGFDAKLLKELHANMKELE
VSDSPFVDLQRKVGDARTAHWIQPKLVGQIKFADKTRDMRLRHASFQGLREDKPPRDVGQ
EVPAKLEEVLTNPVPRKATRKKEPARSAAATQKTSRSKRAQNSKSAPAEGNSDYDPQSEM
FAGVRFTHPEKIVYPEAELTKLDIARYYREIAEWILPHVVHRPIVVVRCPDGAGKQCFYQ
KHPQPGAPENLRQIPIKESTATKNYVVVDDVEGLLSLVQMGSLEIHTWGSTEDHLERPDR
LIFDLDPDENVSWAKVVESARQIHDFLHELGLASFIKTTGGKGLHIVLPIERRHEWDEAK
EFCKRVADAIVAAAPAHFTSNMSKAARKNKIFIDYLRNARGATAVAPYSTRAKENAFVSM
PLEWEEVSTKITSDYFTIKTALQRLATLKRDPWREISKVRQSLSAPSKKLDKVLRN
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgggactcaccgactaccagcgcaagcgtcgattcgacaaaacgccggaacccccggcc
caaaccaaggcgggaaaaggctggtcgtacgtcgttcagaagcacgacgcatcgcacctg
cactatgacttccgcctggaactggatggagtcctgaagagctgggcagtcccaaaaggg
ccctctctcgatacaacggtgaagcgcctcgccattgaggtcgaagatcatcccgtcgac
tatggcacgtttgaggggacgatccccgagggggagtatggaggaggcaccgtcctcttg
tgggatacgggaagctgggaaccgatcggggacccggaagctggactgcgggaaggcaag
ctgaagttcaatctcaaaggcaagaagctgaaggggggctggactctcgtccgcactcgc
cgcaagggcagctcgtctcaaaagccccaatggctcctcatcaaagaacaggatgctcag
gcacgctccatggacgacggggatatcctggaggaacaacctctcagcgtttcgtcaaaa
cgcgatctggacaccatcgctgctgacgccgacgccggaaagaaaaaacaaacgacaaag
acggccgacatccccacatcacgaactcgctcaagcagttcccccaagtcgagcaaatca
aagcgaactcaagcttcatcaatccccgagcccgacaaaatcagcgttcaactggccacc
ctggttgacgaagcgccagaaggggatgaatggtgccacgaaatcaaatttgatggctat
cgaatcctctgccacattgatgatggaaccagtcgctttgtcacacgcaaccacaaagac
tggacggcgcgcctttccgaactggccagacaggccgctcatctgaagtgcgatcaggcc
attctcgacggcgaggtcgtcgccatgagtagcgacgggacgaccgatttccaatcgctg
cagaacgccttccgtgatcggggtactgaccagttgcgctactacgtcttcgacctgctg
tatctggatggagaagacctgcgcgagcagccgctgcaagaacgcaaacaggcactccag
acgttgctggagtccacatccagccatcgatccatccaatactcagagccgatcatgggg
aggggggatgtcttcctcaaacaagcatgcaaactccatctggaagggatcatctgcaaa
cgactggatcagccgtaccgtccgggacgtggcaccgactggctcaaggtgaagtgtcta
aaacaggaagagttcgtgattggtggcttcacggacccctccggatcgcgaaccggattt
ggcgctctgctggttggtttttatgacgacgaacaaaaactgcactacgccggtaaggtg
ggcaccggcttcgatgcaaaactgctgaaagaacttcatgcgaacatgaaggaactggaa
gtgtcagattccccgttcgttgatctgcagcgaaaagtcggcgatgcgaggacggctcac
tggatccagccgaagctggtcggacagatcaagttcgctgacaaaactcgcgacatgcga
ttgcgacacgcctccttccagggcctgcgagaggataagccaccacgcgacgtcggccag
gaagtacctgccaaacttgaggaagtgctgaccaatcccgtccccaggaaagccactcgc
aagaaggaaccggcacgatcggcggcagcgacccagaaaacgtcccgcagcaaacgggct
cagaacagcaagagtgcacccgcagaaggtaactccgattacgatccgcagtcagaaatg
tttgcgggggtccgtttcactcatcctgaaaaaatcgtctacccggaagctgaactcacc
aaactggacatcgctcgttattaccgggaaatcgcagaatggatcctgccacacgtcgtg
catcgccccatcgtggtggtgcgctgccccgacggggctggcaaacagtgcttctaccag
aagcatccccaacccggcgctccagagaatctgcgacaaattccaatcaaggaaagtacc
gcgacaaagaattacgtggtggtggacgatgttgagggcttactgtcactcgtccagatg
ggaagcctcgagattcacacctggggcagtaccgaggatcacctcgaacgccctgatcgt
ctgatttttgatctcgatcctgacgagaatgtctcttgggcgaaagtcgttgagtccgcg
cgacaaatccacgactttctgcacgaactcgggttagcgagttttattaaaacaacaggc
ggcaagggcctgcacatcgtccttccgattgagcgtcgacatgagtgggacgaggcgaag
gagttctgcaaacgcgtggcggacgcgatcgtcgcagcggctcccgcccacttcacttcg
aacatgtcgaaggccgccagaaagaacaaaatctttatcgactacttgcgaaacgcgcgc
ggggcaacggccgtcgccccctattcgaccagagccaaagagaatgccttcgtttcgatg
ccactggagtgggaagaagtttccacgaagattacttcggactacttcacaatcaagaca
gccctgcagcggctggccacactgaaacgagacccctggcgggaaatatccaaagtccgc
caatccctctctgccccgagcaagaaactggataaggtcctgcggaactaa
DBGET
integrated database retrieval system
