Schlesneria sphaerica: ACGY09_18400
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Entry
ACGY09_18400 CDS
T11240
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sspe Schlesneria sphaerica
Brite
KEGG Orthology (KO) [BR:
sspe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sspe03016
]
ACGY09_18400
Enzymes [BR:
sspe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACGY09_18400
Transfer RNA biogenesis [BR:
sspe03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACGY09_18400
Prokaryotic type
tRNA splicing ligases
ACGY09_18400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XJS14569
LinkDB
All DBs
Position
5054251..5055768
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AA seq
505 aa
AA seq
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MPPLPEAERNFIIHTLIPTSEATAILPTGTQTPPITVIGTDAIRQTFDEGCLQQAVNSRL
APGVTDLVLNPDAHVGYGAPIGCVLVSPTHVYPGPVGVDIKCSMSLLQLSLPADQIVDRS
TRRALINAICERTPTGTGRGQRHVKKSRIVYEQLGKQLLVEGASESVCQQLGIPAEWARR
CEDAQHFGHDGTASALGERLQTHLDSGGLPTFERQIHQLGSYGGGNHFGECEVVQVEDHD
RARQAADVFGLKDQHVAFLSHCGSRGIGHTLASGQFKTLQRKFESWNIPLPGQDRELVYA
PLGTPEANAYLDDMALGANFATLNHLLINALVLEAFQEVIPGVTGQLVYFISHNIVRQEV
VNNRLSWVHRKGATRAFPAGHHALKGTMYESTGHPILLPGNPQAGSSVMVAEQGAALSCY
SVNHGAGRVLGRKRAIRELDQQSIDQSFDNEDILTNCRLYPKDEAPAAYKNFDEVIESVK
MAGLATEVARLKARFVIKDGDKADD
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
gtgccaccgcttccggaagctgaaaggaatttcatcattcacacgctcattcccacttcc
gaggcgaccgcgattcttccgacggggacgcagacaccccccattacggtgatcgggacg
gacgcgatccggcagacatttgacgagggatgcctgcaacaggcggtgaactcgcggctg
gctcctggagtgacggacctcgtcttgaatccagacgcccatgtgggctatggagccccc
atcggatgcgtgctggtgtcgccgacacatgtttatccggggccggtcggtgtggacatc
aagtgttcgatgagcctgctgcaactgagtcttcctgcggatcagatcgttgatcgatcc
acccgtcgcgccctgatcaatgcgatttgtgaacggacgccgacgggaaccgggcgggga
caacgacatgtgaagaaatcccgcatcgtctatgaacagctcggcaagcaactgctggtc
gaaggggcttccgagtcggtctgtcagcagcttggaattcctgccgagtgggctcggcgt
tgtgaagacgctcagcactttggacatgacggaaccgcttccgctctgggcgagcgtctg
caaacgcaccttgactccggcggcctccccacgttcgagaggcagattcatcagttaggt
tcgtatggtggcgggaatcattttggtgaatgtgaagtcgttcaggtggaagaccatgac
cgcgcccgacaggccgccgacgtgtttggcctgaaggatcagcatgtcgcattcctctct
cattgcggatcgcgcgggatcgggcacactctcgccagtggccagttcaagacgctgcag
aggaaatttgaaagctggaatatcccgctccccggacaggatcgggaactggtttacgct
ccactgggaactcccgaagcgaacgcgtacctggatgacatggctctgggagccaacttt
gccacactgaaccacctgttgatcaacgcgctggtgctggaggcgttccaggaagtgatt
ccgggcgtgaccggacagcttgtctatttcatcagtcataacattgttcgacaggaagtt
gtgaacaaccgcctctcctgggttcaccggaaaggagcgactcgggcctttccggcggga
catcatgcactgaaggggacgatgtatgaatcaacgggtcatcctatcctgttaccgggg
aacccgcaggccggttccagtgtcatggttgcggaacaaggagcggcgttgagttgttac
agcgtgaatcatggagcaggacgggtactgggacgtaagcgagccatccgcgaactggac
cagcaaagtattgatcagtcgtttgacaacgaagatatcctgacgaactgccgtctttat
cccaaagacgaagctccggcggcgtataagaactttgacgaagtgatcgagtctgtgaaa
atggcgggactggcaacggaagtcgcccggctgaaagcacggttcgtgatcaaggacggc
gataaggcggatgattaa
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