Sporomusa sphaeroides: SPSPH_017940
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Entry
SPSPH_017940 CDS
T10405
Symbol
rnjA_2
Name
(GenBank) Ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ssph Sporomusa sphaeroides
Pathway
ssph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSPH_017940 (rnjA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssph03019
]
SPSPH_017940 (rnjA_2)
Messenger RNA biogenesis [BR:
ssph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPSPH_017940 (rnjA_2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WXA39082
LinkDB
All DBs
Position
1955436..1957100
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AA seq
554 aa
AA seq
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MSRQPNKVQIIPLGGMGEIGKNMTVIRYGDEIIVIDSGLMFPEDDMLGIDLVIPDITYLL
DNRDLVKAVVLTHGHEDHIGALPYVLKQLNVPVYGTRLTLGILEGRLKENNVPATNLNAV
KPGDRIQIGNFKIGFIRVSHSIADSVALSIKTPVGVIVHTGDFKLDQTPVDGKVTDFHRF
AELGDQGVLVLLADSTNAERPGYTQSEKSVGVTFDETFRSARERIIIASFSSNIHRIQQA
IDTACKYRRKVAILGRSMVNVANIALELGYLNVPEGILIDIDEINNYPSSAVVILTTGSQ
GEPMSALTRMAMSEHKKVEIVPGDTVIISATPIPGNEKLVSRTIDYLFRQGAEVVYEAAS
GIHVSGHASQEELKLIQNLIRPKFFIPVHGEYRHLVKHAQLAQSMGLPKENVFVAENGQV
LEFTADKGLVAGKVTSGNVLVDGLGVGDVGNIVLRDRRQLSQDGILIIVVTMDKQGGQVA
AGPDIVSRGFVYVRESEQLMEDAKERVRQALEKCENNGITEWAAIKSNVRDTLGKYLYER
TRRRPMILPIIMEV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttgtcacgacaaccaaacaaagtacagataattcccttgggcggtatgggggagatcggt
aaaaacatgacggtcatacgctatggtgacgaaatcatagtaattgactcaggtttaatg
ttccctgaagacgacatgctggggattgatttggttattcctgatattacctatctgttg
gacaaccgcgatttagtgaaggcggttgttttaacgcatgggcatgaggaccatatcggt
gccctgccttatgtattaaaacagctgaatgtccctgtatatggcactcgtttgactctt
ggcattctggaaggccgtttgaaagaaaacaacgttcctgcgactaatctgaatgccgtt
aaaccaggcgaccgaattcagattggcaattttaaaatcggttttatccgggtaagtcac
agtatcgccgactcagtagctttatccataaaaacaccggttggtgtgattgtccatacc
ggcgactttaaacttgatcagactccggttgacggtaaagttactgattttcaccgcttt
gccgagttaggtgatcaaggggttctggtacttttggctgatagtaccaatgcggaacga
cctggttacacgcaaagtgaaaagtcggtgggagtcacctttgacgagacttttcgtagc
gcgcgggagcgtattattattgcttccttttcttctaatattcaccggattcagcaagcc
attgatactgcttgcaaataccggcgcaaggtagctattcttggacgcagcatggttaat
gttgccaatatcgctctggagctaggctatttaaatgtgcctgaagggatacttattgat
attgatgaaattaataattatccgtcttcagcagttgttattctgacaacaggcagtcag
ggggaaccgatgtcggctttaacgagaatggcgatgtcggaacacaaaaaggttgaaatt
gttccgggagatacggtaatcatttcagccacaccaatccccggcaacgagaaactggtt
tcacgcacaattgactatctttttcggcaaggtgccgaagtggtatatgaagcggcctcc
ggcattcatgtttccggccatgcaagccaggaggagctcaaattaatccaaaacctgatc
cggccgaaattctttatcccggttcacggagaataccgtcacctggtaaagcatgctcaa
ctggcgcaatccatggggctgcctaaggagaacgtttttgttgcagaaaatggccaggta
ttggagtttaccgccgacaaggggctggtagccggcaaggtaacttccggcaatgtctta
gtagatggccttggggttggtgatgtgggcaatattgtacttcgcgaccgccggcagctt
tcacaggacggaatattaatcattgtggtcacgatggacaaacaaggcgggcaagtggcc
gcaggcccggatattgtatcccgtggttttgtctatgtacgcgagtctgaacagcttatg
gaagatgccaaagagcgtgtcaggcaggcgttggaaaagtgtgaaaataacggtattacg
gaatgggccgccattaaatccaatgttcgtgatacgctgggcaaatatttatatgaacgt
acccgccgccgtcctatgattttaccgataatcatggaagtataa
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