Sporomusa sphaeroides: SPSPH_018050
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Entry
SPSPH_018050 CDS
T10405
Symbol
cshA_1
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssph Sporomusa sphaeroides
Pathway
ssph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSPH_018050 (cshA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssph03019
]
SPSPH_018050 (cshA_1)
03009 Ribosome biogenesis [BR:
ssph03009
]
SPSPH_018050 (cshA_1)
Enzymes [BR:
ssph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPSPH_018050 (cshA_1)
Messenger RNA biogenesis [BR:
ssph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPSPH_018050 (cshA_1)
Ribosome biogenesis [BR:
ssph03009
]
Prokaryotic type
rRNA helicases
SPSPH_018050 (cshA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Helicase_RecD
AAA_30
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WXA39093
LinkDB
All DBs
Position
1969227..1970801
Genome browser
AA seq
524 aa
AA seq
DB search
MKDTVTLFGEIALSKKTAAAITAMGFEEPSPIQSQTIPLVLTGKDVLGQAQTGTGKTAAF
GIPIMERITEARQIQALVLTPTRELAIQVSEELAKIGKFKRIKTLPIYGGQAIERQIRTL
KLGVQVVIGTPGRLLDHIRRNTIKLDHVKMLVLDEADEMLDMGFIDDIESILAHVPTERQ
TLLFSATMPAEIMRLANRYMKDRVTVTISKEQLTVPLIDQIYYETRDKLDGLCRVLDSET
VDRVIIFCRTKKGVDDLVASLSARGYISDGLHGDLSQTQRDRVMKKFRDGKLDILIATDV
AARGLDIDHISHVINYDIPQDPESYVHRIGRTGRAGKKGVAITFIQPREYRQLKIIEKEV
KTRILRRQLPSPADILERQTEVIKNQLTQTINRGGFDAYSSIIADLAADYDPIELAAAAL
KLFQEGYKEQVSLEKTQFANTGAEPGMVRLFINAGRAQRIQPQDIVRTIAEEADIEGSII
GVINIYDKFTFVEVPETVAERVLSVMNKNTIKGYRINIEPAKGR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacacagtaactttatttggtgagatagctttaagtaaaaaaacagcggcagct
attacggcgatggggtttgaagaaccttcccccattcagagccagactatcccgctggta
ttaacaggcaaggatgttttaggtcaggcacagaccgggacaggtaagactgccgccttt
ggtataccgatcatggagcggataaccgaggccagacaaatacaagccctggtgcttacc
ccaacgcgcgaactggccatccaggtttctgaagaattggctaaaatcgggaaattcaag
cggattaaaaccttgcccatctatggaggacaggccatagaaagacagattagaacgctc
aaattaggtgtacaggtcgtcatcggcactcctggccgactgcttgaccatattcgcaga
aacacgatcaagctggaccatgtaaaaatgctggtacttgatgaagctgatgaaatgctg
gatatgggctttatcgacgatattgaaagtatccttgcgcatgttcccactgagcgccaa
accctgctattctcagctactatgccggctgaaataatgagattagccaataggtatatg
aaagacagagtaacggtaactattagtaaagagcaactgacagtgccgctgattgaccaa
atctattacgaaacccgtgataagcttgacggtttgtgccgggtactcgattccgagacg
gttgaccgggttatcattttttgccggacaaagaaaggtgtcgacgatctggtggcgtct
ttatcggcgcgcggctatatttcagacggattgcatggagatttaagccagacgcagcgt
gaccgggttatgaaaaaattccgtgacggcaagctggatattcttattgccaccgatgtt
gctgcgcgggggttggatattgaccatatcagccatgttattaactatgatattcctcaa
gaccctgaatcctatgttcaccgcattggccgtacaggacgcgccgggaaaaagggtgtg
gcaattacttttatccaaccccgtgagtacagacagcttaagattattgagaaagaggtc
aagacacgcatcctgcggcgccaattgccatcacctgccgatattcttgaacgtcagaca
gaagtgattaaaaaccagctcactcagaccattaaccgcggcgggtttgatgcctatagc
agtattattgctgatttggctgccgattacgacccgatcgagcttgcggcagctgcatta
aaactgtttcaagaaggctacaaagagcaggtaagtcttgagaaaacccaatttgccaac
accggggccgagcctggcatggtaaggttatttattaatgccggacgagcgcaaagaatt
cagccacaggacattgttcgcacaattgccgaagaagctgacattgaaggcagtattatc
ggtgtaataaatatttatgataaatttacctttgttgaagtaccggaaaccgttgctgaa
cgggtactgtcggttatgaataaaaataccattaaaggctaccggattaatatagagccg
gcaaagggacgctaa
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