Sporomusa sphaeroides: SPSPH_023610
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Entry
SPSPH_023610 CDS
T10405
Symbol
cshE
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshE
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssph Sporomusa sphaeroides
Pathway
ssph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSPH_023610 (cshE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssph03019
]
SPSPH_023610 (cshE)
03009 Ribosome biogenesis [BR:
ssph03009
]
SPSPH_023610 (cshE)
Enzymes [BR:
ssph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPSPH_023610 (cshE)
Messenger RNA biogenesis [BR:
ssph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPSPH_023610 (cshE)
Ribosome biogenesis [BR:
ssph03009
]
Prokaryotic type
rRNA helicases
SPSPH_023610 (cshE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF4391
SecA_DEAD
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WXA39625
LinkDB
All DBs
Position
2493325..2494626
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AA seq
433 aa
AA seq
DB search
MSTNFSALGIRPELTQFLKTTGITRPTPIQAQAIPILLAGKDVIAQAQTGTGKTLAFLLP
ILEKIKISAPHVQALIITPTRELTLQITAEAAKLANILGINVLSVHGGKAVDEQIRKLKG
QPHIVVGTPGRLLDHVRRKTLVLAGVSRLVLDEADQMLHMGFLEEVEELIKLTSSKRQTL
LFSATMPPKVRGLAARYMDKPADIRVQTENVTLDEIKQIMIELPEAGKLDKLCSLIDEQQ
PYLAIVFCHTKERAKAVNTALIQRGYKADELHGDLSQAKRMQVMRRFSEAKLQILVATDI
AARGLDIEGVTHVFSYDIPHDPESYIHRIGRTGRAGQTGAAITFISPGEHMYLRLIEQGI
KSSIEKYKANGQKVIKNAKKASPASTKKITEKPVTAKKTGDKKAVSHGGNNLRSRRKPKA
DAANSGSKAPRGR
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacaaacttttcagccttaggcatccgccctgagttgactcaatttttaaaaaca
acaggaattacccgtcctaccccgatacaagcccaggcaattcctattttgctggcaggc
aaagatgttattgcccaagcccagacaggtaccggcaagacactggcctttttgctgccc
attttggaaaaaataaaaatttcggcaccccatgtacaggctttgattatcaccccaact
cgggaattaacactgcaaattacggccgaggccgccaaactggccaatatccttggcatt
aatgtcttgtcggtacatggcggcaaagcggtggatgagcaaatccgcaagttgaaaggt
cagcctcacatcgtagtcggcacaccaggccgcttgcttgaccatgtcagacgtaaaacg
ctggtgcttgccggtgtttcccggctggtgctggatgaggccgatcaaatgctgcacatg
ggctttttagaagaagtggaagaactgataaagctgacttccagcaaacggcagaccctg
ctgttctcggcaaccatgccgccgaaggtacggggactggccgcccgttatatggacaag
ccggccgatatccgcgtccaaacggaaaatgtaaccttggatgaaatcaaacaaatcatg
attgaactgcctgaggccggcaagcttgacaaactctgcagcctgattgatgaacagcag
ccttatctggccattgtattttgccatactaaagaacgggccaaagctgtcaatactgcc
cttattcagcgcggctataaagctgacgagctgcatggcgacttgtcacaggctaaacgt
atgcaggttatgcgccggtttagcgaggcaaagctgcaaatccttgttgccacagacatt
gccgcccggggcctggacattgagggcgtcacccatgtcttcagttatgatatcccgcac
gaccccgaaagctacatccaccgcatcggccggaccggacgggccggtcaaaccggggca
gccatcaccttcattagtcctggtgaacacatgtatctgcggctgattgagcagggaatc
aagtcttctattgaaaaatataaagccaacggacaaaaagtaattaaaaatgcgaaaaaa
gcttctccggcatcaactaagaagattacggaaaaaccggtgactgccaagaagactggc
gacaaaaaagccgtcagccatggcggaaacaatctccgtagccgccggaaacctaaagca
gacgcagcgaattccggcagcaaagctcctagaggcagataa
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