Sporomusa sphaeroides: SPSPH_024630
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Entry
SPSPH_024630 CDS
T10405
Symbol
ligD_2
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ssph Sporomusa sphaeroides
Pathway
ssph03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SPSPH_024630 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssph03400
]
SPSPH_024630 (ligD_2)
Enzymes [BR:
ssph01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SPSPH_024630 (ligD_2)
DNA repair and recombination proteins [BR:
ssph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SPSPH_024630 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
UPF0270
Motif
Other DBs
NCBI-ProteinID:
WXA39705
LinkDB
All DBs
Position
2581121..2582044
Genome browser
AA seq
307 aa
AA seq
DB search
MPSDNKPKTGIEVAGRKLKVGNLDKIFYQATGFTKGQMLDYYIRIAPLLLPHLTNRPLTM
KRYPHGAQGKFFYQKECPSPRPGWIKTIPVWSGSNNRHVNFCNAADLPTLVWAANLAALE
LHTSLSLAPAIHQPSLLVFDLDPGPPATIFDCAQIGLLLKDYFDKHQLQSFPKTSGSKGL
QVYVPLNTPVNYDSTKKFARILATRFQEKYPDKVVANMKKQLRTGKVFIDWSQNDEHKTT
VCVYSLRAKDRPSVSTPVTWQEVAGAVEHKNPDLLTFEAEQVLERASLLGDLFSPVLTLK
QKLPAIQ
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
gtgcccagtgacaataagcctaaaaccggcattgaggtggccggacgcaaattgaaggtc
ggcaatcttgataaaatattttatcaggcgacaggtttcaccaaaggccaaatgcttgac
tattatattcgcattgcccccctgctcctgccgcatcttaccaaccggccgctgaccatg
aaacgctatccccatggggcacaaggtaagtttttctaccagaaggaatgcccctccccg
cgtcccggctggatcaaaaccataccggtatggagcggcagcaataaccggcacgtcaat
ttttgcaatgccgctgatttacccaccttagtgtgggctgccaatctggcagcactggag
ctgcatacgtcactatccctggcaccggcgatacatcagccttcgctgctggtattcgat
cttgatcccggtccgcctgccaccattttcgactgcgcccaaatcggcctgctgttaaag
gattattttgataagcaccaactacagagttttcccaaaacttccggctccaaaggcctg
caggtatatgtgccgctaaatactccggttaactatgacagcactaaaaagtttgcccgg
atacttgccacccgctttcaggaaaagtatcctgacaaggtggtcgcaaacatgaagaaa
caattgcgcacaggtaaagtctttattgattggagccaaaacgacgaacataaaacaacc
gtctgtgtctactcactccgggctaaagaccgcccctctgtttctacgccggtaacctgg
caggaagttgccggtgccgtagaacataaaaatccggatttgttaacctttgaagcagag
caagtactggaaagagccagtctgctgggggatttattctcgccagtgctcaccctaaag
caaaagctgccggccatacagtag
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