Sporomusa sphaeroides: SPSPH_035530
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Entry
SPSPH_035530 CDS
T10405
Symbol
cshA_2
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssph Sporomusa sphaeroides
Pathway
ssph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSPH_035530 (cshA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssph03019
]
SPSPH_035530 (cshA_2)
03009 Ribosome biogenesis [BR:
ssph03009
]
SPSPH_035530 (cshA_2)
Enzymes [BR:
ssph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPSPH_035530 (cshA_2)
Messenger RNA biogenesis [BR:
ssph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPSPH_035530 (cshA_2)
Ribosome biogenesis [BR:
ssph03009
]
Prokaryotic type
rRNA helicases
SPSPH_035530 (cshA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Helicase_RecD
DUF5612
UvrA_inter
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WXA40762
LinkDB
All DBs
Position
3784480..3785895
Genome browser
AA seq
471 aa
AA seq
DB search
MEKFKELGISDTIIRALSDMGFEEPTPIQAQAIPTLLSGKDLVGQAQTGTGKTAAFGIPL
LENIKTASGAIYGIILAPTRELAIQVAEEMNKLGQFSNINTLPIYGGQDIQRQIKALQRK
PQIIVATPGRLMDHMERRTIKLTDVRMVVLDEADEMLNMGFIEDIEKILSATPDSRQTLL
FSATMPRQIQNLAQKFLKEPALISVKAKEVTVPLIEQYYMELQDRQKFDVLCRLLDIQSP
ELAIVFGRTKRRVDELFEALKKRGYSAEGIHGDLTQPKRDAVIRQFREGTIDILVATDVA
ARGLDVSGVTHVYNFDIPQDPESYVHRVGRTGRAGQTGSAMTFVIPRELEHLRSIERLTK
RKIVRMPVPTLSEAIEGQQRLAVEKLLNQIEEGNLESYRGRAEDLLAETDSVSLISAALK
LLTKEPDTTPIKITEEAPLRSRSFGGRRKPPENRKGAPSGKPRYKSGGFKK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaaatttaaagagttaggtattagtgatacaatcattcgcgctcttagtgatatg
ggcttcgaagagccgacccccatacaggcccaggccattcccacattattatccggcaag
gatttagtcggacaagcccaaaccggtacaggcaaaacggctgcctttggtatcccgtta
ctggaaaatattaaaaccgcttccggcgccatctatggaattatcctggcgcctacccgt
gaactggccattcaggtagctgaagaaatgaacaagctgggccagttctccaacattaac
accctgcccatctatggcggccaggatattcaacgccaaattaaagccctgcagcgcaag
ccgcaaattattgtagcaacccccggccggttgatggaccacatggagcgccgcaccatt
aagctgaccgatgtgagaatggtggtgctggacgaagccgatgaaatgctcaacatgggc
tttattgaggacattgagaaaatcttaagcgccaccccggattcccgtcagactctgctc
ttttccgcaactatgcccagacaaatacaaaatctggcgcaaaaattcctgaaagagcct
gctctcatcagcgttaaagccaaagaagtcactgtgccgctcatcgagcagtattatatg
gagttgcaggacaggcagaagtttgatgtgctttgccggctcctggatatccagtcccct
gaacttgccattgttttcggccgcaccaaacgccgggtggacgaactgtttgaagcttta
aagaaacgcggctattctgccgaaggcattcatggtgatctgactcagcctaagcgggat
gccgtcatcagacagttccgcgaaggcacgattgatatcctggtagctaccgacgtagct
gccaggggccttgatgtcagcggtgttacccatgtatataatttcgatatcccgcaagac
ccggaaagctatgtccaccgggtaggccgtacaggccgggcaggtcaaaccggctcagcc
atgacttttgtcatcccccgggagcttgagcacctgcgttctattgaacggctcaccaag
cgcaagattgtacggatgcctgtacctaccctgagtgaagccattgagggtcagcagcgg
ctggctgtggaaaaactgcttaatcaaattgaagaaggaaacctcgagtcgtaccgcggc
cgggctgaagacctgctggccgaaacagattcggtgtccctgatatcggcagcactcaaa
ttgctcaccaaagaacctgacaccacgcctatcaaaattacggaagaagcgcccctgcgc
tcccgttcttttggcggcagaagaaaaccgccggaaaatagaaaaggcgcgcctagcggc
aagccccgctataaatcgggcggctttaaaaaatag
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