Sporomusa sphaeroides: SPSPH_039520
Help
Entry
SPSPH_039520 CDS
T10405
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssph Sporomusa sphaeroides
Pathway
ssph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSPH_039520 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssph03019
]
SPSPH_039520 (srmB)
03400 DNA repair and recombination proteins [BR:
ssph03400
]
SPSPH_039520 (srmB)
Enzymes [BR:
ssph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPSPH_039520 (srmB)
Messenger RNA biogenesis [BR:
ssph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPSPH_039520 (srmB)
DNA repair and recombination proteins [BR:
ssph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SPSPH_039520 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
Cas3-like_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
WXA41154
LinkDB
All DBs
Position
complement(4255513..4257504)
Genome browser
AA seq
663 aa
AA seq
DB search
MLNIDEAFSSNFPNLTSKFSLKEFQKSVISNVVEQNNTLCIMPTGGGKSLIYWMSGILSC
GITIVISPLIALIDEQSEKIAEQGFKVFTIHGGMDSAKQAKALKDFANKVINPKFIFVSP
EKIATDGLFEYCIRERKKEITMLAIDEVHCVSQWGTSFRPFYKRIPDFLNCIYNEAGDKK
PRILALTATLNPKEVVDICREFKIDKSNIIRDNLLMRSEISLKVLQFNNENEKEDKLWDI
IKIHKNEKILIYVYRIGSERGVEKLANKSNEKGYKSVCFHGEMTAKERKEIIDRYKSNEI
NVIFATNAFGMGIDIPDIRVVIHFMIPESVEQYYQEVGRAARDGNVANAYLLYTNKNIDV
KRKYFIDGSFPSIEKLIKTYKKIAEQGEGLHTLPYFEDEEVQQCLSYYLNSGVLKIECKG
FSDLKSITNVKDKTLTDIINSTKTKNLITTVKKSKFDVKTIINKVYKGIVNGLATTTKPL
DRRLIVEVIEQEISNVKMQDIQNAIDEKREYKHALLDYLIFLIADNTSSNELHQEIGRYL
GVEKHMLNKIYSTVKGDRVRSKSEVIIANLLAKNSIAYEYEKKLEYEKGKWIEPDFTITL
PDGRDLYWEHLGMLGVESYDKRWLEKQDIYDKFYKGKLIVTYEGATITNSTLDIIDKISS
DYY
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgcttaatattgatgaagcttttagcagtaatttccctaatttgacaagcaaattctct
ttgaaagagtttcaaaaaagcgttatatctaacgttgttgagcaaaataatacactttgc
atcatgccaacaggcggaggaaagtccttgatatattggatgtcaggtatactttcctgt
ggtataacaattgtaatttctccattaattgcgctaattgatgagcaatccgaaaagatt
gcggagcaaggctttaaagtatttacaattcatggcggcatggattcagcaaagcaagca
aaagctttaaaggattttgcaaataaagttattaaccctaaattcatcttcgtaagtcca
gaaaaaattgcaacagatggactgtttgaatattgcattagagagcgtaaaaaggaaata
actatgcttgcaattgatgaggtgcactgtgttagccaatggggaaccagtttcaggcct
ttctataagcgtataccggatttcttgaactgtatatacaatgaggctggagataaaaaa
cctagaatccttgcattaactgcaaccttaaatcctaaggaagttgtagatatatgtagg
gagtttaaaattgataaatccaatattataagagacaatcttctcatgagatcggaaata
tcattaaaggttcttcaatttaacaacgagaatgaaaaggaagataaactctgggacatt
atcaaaattcacaagaatgagaagatactaatctatgtttatagaattggtagtgaacgt
ggtgtagaaaagcttgcaaataaatctaatgaaaaaggttataagtctgtttgcttccat
ggtgagatgacagccaaggaaagaaaggagattatagacaggtataaaagcaatgaaatc
aatgtaatatttgctaccaatgcatttggcatgggaatagatatcccagatattagggtt
gttattcattttatgataccggaatctgtggagcaatattatcaggaagtcggaagagcc
gcacgagatggaaatgttgctaacgcttatttactatataccaataaaaacatagatgta
aaacgaaagtattttattgatggttcattcccatcaattgagaaactcataaaaacatac
aagaaaattgccgaacagggtgaggggctgcatacattgccttactttgaggatgaagag
gtgcagcaatgcttatcatattacttaaatagcggagtattgaaaatagaatgtaagggg
ttttctgacttaaagagtattacaaatgtaaaagataaaactcttacagatattataaat
agcacaaaaaccaaaaatttgattactactgttaaaaaatctaagttcgatgttaagacg
attattaataaggtttataaaggtattgtaaatggtctggctactacaactaagccattg
gatagacggttgattgtagaagttatagaacaagaaatttctaatgtaaaaatgcaagat
atacaaaatgccatagatgaaaagcgtgaatataaacatgcgttacttgattatcttata
tttctaatagctgacaacacatcttcaaacgagcttcatcaagaaataggcagatatctt
ggcgttgaaaagcatatgcttaacaagatatactctactgtgaaaggtgatcgtgtgagg
agcaaatcggaggttattattgctaaccttcttgccaagaatagcattgcttatgagtat
gaaaagaagcttgaatacgagaaaggtaaatggattgaacctgattttacaattacacta
cccgatggaagagacttgtattgggagcacttaggaatgctgggggtagaaagctatgac
aaacgatggcttgaaaagcaggatatatatgataaattttacaagggaaaactcattgtg
acatatgagggagcaactattacaaatagcacacttgatattattgataagatatcttcc
gattattattga
DBGET
integrated database retrieval system
