Sporomusa sphaeroides: SPSPH_042250
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Entry
SPSPH_042250 CDS
T10405
Symbol
groL_3
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
ssph Sporomusa sphaeroides
Pathway
ssph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSPH_042250 (groL_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssph03019
]
SPSPH_042250 (groL_3)
03110 Chaperones and folding catalysts [BR:
ssph03110
]
SPSPH_042250 (groL_3)
03029 Mitochondrial biogenesis [BR:
ssph03029
]
SPSPH_042250 (groL_3)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssph04147
]
SPSPH_042250 (groL_3)
Enzymes [BR:
ssph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
SPSPH_042250 (groL_3)
Messenger RNA biogenesis [BR:
ssph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SPSPH_042250 (groL_3)
Chaperones and folding catalysts [BR:
ssph03110
]
Heat shock proteins
HSP60 / Chaperonin
SPSPH_042250 (groL_3)
Mitochondrial biogenesis [BR:
ssph03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
SPSPH_042250 (groL_3)
Exosome [BR:
ssph04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SPSPH_042250 (groL_3)
Exosomal proteins of other body fluids (saliva and urine)
SPSPH_042250 (groL_3)
Exosomal proteins of breast cancer cells
SPSPH_042250 (groL_3)
Exosomal proteins of colorectal cancer cells
SPSPH_042250 (groL_3)
Exosomal proteins of bladder cancer cells
SPSPH_042250 (groL_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
WXA41424
LinkDB
All DBs
Position
4554307..4555920
Genome browser
AA seq
537 aa
AA seq
DB search
MAKQIIFDEEARRALERGVNALANAVKVTLGPKGRNVVLDKKFGAPTITNDGVTIARDID
LEDPFENMGAQLVKVVATKTNDVAGDGTTTATLLAQAMVREGMRNVAAGANPMIIKKGIE
RSVTALVDEIRQGAKKVETKDAIAQVASISASDEEIGKLIAEAMDKVGKDGVITVEEAKT
MGTDLEVVEGMQFDRGYISPYMITDTDKMEAVLSEPYILITDRKIGAIADLLPILEKVVK
QGKELLIIAEDVEGEALATLVVNKLRGTFRAVAVKAPGFGDRRKAMLEDIAILTGGNVIT
EDLGRKLDSVELSDLGRARLVRVAKEETTIVDGSGSADTIKGRVGQLKAQIDETTSDYDK
EKLQERLARLAGGVAVIRVGAATEVELKEKKLRIEDALNATRAAVEEGIIPGGGTAFIDV
LPVLDKIIAAGDEATGVAIVKRAVEEPLRQIANNAGLEGSVIVENVKKAGKGIGFNALTE
EYTDMIAAGIVDPAKVTRSALQNAASIAAMVLTTETLVADKPKKEPPLPGGGMDGMM
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacaaattatttttgacgaagaagcacgccgggcactggaaaggggcgtcaat
gcgctggcgaacgcggtaaaagtcactttaggccccaaagggcgcaatgtcgtgctggat
aaaaaatttggcgcgccgacgattaccaatgatggcgtgaccattgcccgggacattgac
ttagaagatccgtttgaaaatatgggagcccaactcgttaaagtggttgccacaaaaact
aacgatgtggccggtgacggaaccactaccgccacgctgctggctcaagccatggtccgc
gaaggtatgcgcaatgtagctgccggcgccaacccgatgatcattaaaaaaggcattgag
cggtcggttaccgcactggtagatgaaattagacagggcgccaaaaaagtggagactaag
gatgccattgcccaggtggcttcgatttcagcgtccgatgaagaaattggcaagttgatt
gccgaagctatggacaaagtaggcaaagacggtgttattactgtagaagaagccaagacc
atgggtaccgaccttgaagtcgtggagggcatgcaatttgaccgaggctacatatcgccg
tacatgattactgacaccgacaaaatggaagctgtactcagcgagccttacatcctgatc
accgaccgtaagattggggccatcgccgatttgctgcccatattggaaaaagtcgttaaa
cagggtaaagaactgttaattattgctgaagatgttgagggcgaagcactcgctacgctt
gtagtcaataaacttcgcggcactttccgggccgttgccgtaaaagcccccggctttggc
gaccgccgcaaagctatgctggaagacatcgctattttaaccggtggtaatgtaatcacc
gaagatcttggccgcaagctggacagtgttgaactaagcgatcttggccgggcccgcctg
gttcgcgtcgccaaggaagaaaccacaattgttgacggctccggttctgctgataccata
aaaggccgcgttggccagctcaaagcccagatcgacgaaactacctccgactacgacaag
gaaaaactgcaagagcgtttggccaggctggctggcggagtcgccgtcatccgcgtcggt
gctgccaccgaagtagaactgaaggaaaagaaacttcgtattgaagatgcgcttaatgcc
acccgagctgcggttgaggaaggtattatccctggcggcggcacggccttcattgatgta
cttcctgttctcgacaagatcattgctgccggcgacgaagcaaccggcgtagctatcgta
aaacgcgccgtcgaagaaccgctgcggcaaatcgccaacaatgccggcctcgaaggatca
gttatcgtcgaaaatgtcaaaaaagccggcaagggcattggctttaatgctctgacagaa
gaatacactgacatgattgccgccggtatcgtcgatccggcaaaggtaacccgctctgcc
ctgcaaaacgcagccagtattgcggccatggtgcttaccactgaaaccttggtcgctgac
aaaccgaaaaaagaacccccgctgcccggtggaggaatggacgggatgatgtag
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