Sporomusa sphaeroides: SPSPH_043780
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Entry
SPSPH_043780 CDS
T10405
Symbol
yhaM
Name
(GenBank) 3'-5' exoribonuclease YhaM
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
ssph Sporomusa sphaeroides
Brite
KEGG Orthology (KO) [BR:
ssph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssph03019
]
SPSPH_043780 (yhaM)
Messenger RNA biogenesis [BR:
ssph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPSPH_043780 (yhaM)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
TraI_2
INTS1_RP2B-bd
Cas3_HD
HDOD
Motif
Other DBs
NCBI-ProteinID:
WXA41574
LinkDB
All DBs
Position
complement(4708894..4709859)
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AA seq
321 aa
AA seq
DB search
MRLGEVTKHPKGFRIAGIYQVARFEVKTAKNGKAYGDCVVSDPSFEIPAKYWDIPAESAA
LFQQNSILGLEATLDYFKESPQLTIDRVYVPSPQEIDQSLQSLGLMAPRDIGGMYRQLED
IIAGVRHNRLRQMLVWIFSTNTSFAKQFKRHPGAVRNHHAYIGGLLQHTLEVAEAALDHC
ARNDRINKDLLLAAALVHDIGKVREIAVDALGLPVGFTKEGKLLRHISLGMELVGQACRE
AQVEEEVDVILKHCILSHHGQAEWGSPVAPMLLEAELLHYLDNLSAKTEQFVREQERLEP
GDFTKSYVLRREVYRTSFAGD
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgagactcggggaagtaacgaaacatcccaagggatttagaatagccgggatctatcag
gtagccagatttgaggttaaaaccgccaaaaacggcaaggcctacggcgattgtgttgtg
agtgatcccagttttgagataccggcaaaatattgggatataccggctgagagcgctgcg
ctgtttcagcaaaacagcatactgggcctggaagccacgctggattattttaaagagagc
ccgcagctgacgattgacagggtgtatgtgccttcgccgcaggaaattgatcagtcgctg
caaagtttggggctgatggccccgcgggatattggcggcatgtaccggcaactggaggat
attatcgccggtgtgcgtcataacaggctgcggcaaatgctggtatggattttttccacc
aacacttcctttgccaaacagtttaaacgccatccgggagcggtaagaaaccaccatgcc
tatattggcggcttgctgcagcatacgctggaggtggcagaagcggctctggatcattgt
gcccgcaatgaccggattaacaaagacctgttactggcggcggccctggttcacgatatc
gggaaagtccgggagattgcggtcgatgccctgggactgcctgttggctttacgaaagag
ggcaagctgctgcgtcatatttccctgggaatggagctggtggggcaggcttgccgggaa
gcgcaggtggaggaagaagttgatgtaatcctcaaacactgtattctttcccaccatgga
caggccgagtggggcagtccggtagcacccatgctgctggaagccgagctgctgcactat
ctggataatcttagtgccaaaaccgaacaatttgtccgggagcaggaacggctggagccc
ggcgactttactaaaagttatgttttgcggcgggaagtataccggacaagttttgcgggt
gactga
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