Sphingobacterium spiritivorum: I6J01_01265
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Entry
I6J01_01265 CDS
T07566
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sspi
Sphingobacterium spiritivorum
Pathway
sspi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6J01_01265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspi03019
]
I6J01_01265
Enzymes [BR:
sspi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I6J01_01265
Messenger RNA biogenesis [BR:
sspi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6J01_01265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
Utp25_C
ERCC3_RAD25_C
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QQT36085
LinkDB
All DBs
Position
351677..352984
Genome browser
AA seq
435 aa
AA seq
DB search
MQLIDTDKKVSIIKFNNLQFKDLKLIAPILKALDASGYQNPTPIQEQAIPIIFQRKDLLA
CAQTGTGKTAAFAIPILQMLTYSKEKTAQKRIRTLVLTPTRELAIQIKENFDAYSKELPI
RNLVIYGGVGQQPQRDALRKGIDILIATPGRLLDLYNQGFIDLKQLEYFVLDEADRMLDM
GFIHDVKKVISIIPKKRQTLLFSATMPAEIQKLASHILEDPSKVEVTPESTTAEKIQQSV
YFVSKSDKRHLLTHLLKSENIEHTLVFSRTKHGADRIAKDLAKQGIQAAAIHGNKSQSAR
QNALNNFKDRKLRVLVATDIAARGIDIDDLSYVINFDLPNIPESYVHRIGRTGRAGKDGK
AISFCDDEEYAYLLDIEKSIRMEIPRVEDQPYSLHISPKKPGQAAKKPGTDKNRSKARSG
ASKKPFRRGKFKTKD
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
ttgcagctgattgatactgacaaaaaagtcagcattataaaattcaacaatttgcaattt
aaagatttaaaacttatagcacccattctgaaggcactggacgcttcaggatatcagaat
cccacacctattcaggaacaagcaatccctatcatctttcagcgtaaagatcttctggcc
tgcgcgcagacgggaacgggaaaaacagcagcttttgccatcccaatcctgcagatgctg
acttattccaaagaaaaaacggctcaaaaaagaatacgaactttagtactgactcctaca
cgtgagttagcgatacagatcaaagaaaattttgatgcatactctaaagaattgccgatc
cgtaacctggttatatacggtggtgtcgggcagcaaccgcagcgtgatgccttaagaaaa
ggaatcgacatcctgattgcgactcctggacgcttactggacctgtataatcaggggttt
atagacctcaaacaactcgagtatttcgtactggatgaagcggacagaatgttggacatg
ggatttatccatgatgttaaaaaggtgatctctattattccgaaaaaaagacagaccttg
ttgttttcagcaacaatgcctgcagagattcaaaaactggcatcccatattctggaagat
ccaagtaaagtagaagtaactccggaatctaccaccgcagaaaaaatacagcagtccgtt
tattttgtcagcaaatcagacaaacgtcacctgcttacgcatctgctcaaatccgaaaat
attgaacatacgctggtattctccagaacgaaacatggtgctgaccgaattgctaaagat
ctggcaaaacagggtatacaagctgcggctatccatggtaacaaatcacaatcggccaga
caaaatgcactgaataatttcaaagaccgcaaacttcgcgtattggtagctacagacatc
gcagccagagggattgatatcgatgatctttcttatgtgattaactttgatcttcccaat
atcccggaatcttatgtacaccgtataggtcgtaccggacgtgccggaaaggacggaaaa
gcaatttcattctgtgatgatgaagaatacgcttatctgctggatattgaaaaatccatt
cgtatggaaataccaagagtcgaagatcaaccttacagcttacacatctctccgaagaaa
cccggacaagcggctaagaaacctggtacggacaaaaacagaagcaaagcccgatcgggt
gccagtaaaaaaccattcagaagaggtaaattcaaaacaaaagattaa
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