Sphingobacterium spiritivorum: I6J01_10310
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Entry
I6J01_10310 CDS
T07566
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sspi
Sphingobacterium spiritivorum
Brite
KEGG Orthology (KO) [BR:
sspi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sspi03016
]
I6J01_10310
Enzymes [BR:
sspi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
I6J01_10310
Transfer RNA biogenesis [BR:
sspi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
I6J01_10310
Prokaryotic type
tRNA splicing ligases
I6J01_10310
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QQT37763
LinkDB
All DBs
Position
2479685..2481076
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AA seq
463 aa
AA seq
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MGKKLSGKDLIKLGFPQNNAINIALGQIQRYRKRDKKEAILADARQVLLSPEQFLGDGIW
GKVAEGLVRPVEVRLQQLRTSRVAFSIFGENEIDEQAKRQLYDALKLPVAVSGALMPDAH
SGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSVFDLPASYLKGKRFQLTNMLLEQTCFG
MYETHKNRADHEIFSRKEFQEIPILKNLLGKAWKQLGTSGGGNHFVEFGIVNLNNPRPEW
KLPAGEYVALLSHSGSRGLGANIAKHYTYLAAKQCPLPRSVQHLAWLDLDTHDGQEYWMA
MNLAGDYASACHDDIHRRIAKALGKRPAFKVENHHNFAWKQLIDGKECIVHRKGATPAAK
GELGIIPGSMTAPGYIVVGKGNESSLQSASHGAGRLLSRAACKASFTPGQVQKLLKDTDV
ELVGGSVDEAPMAYKDIRKVIALQSELVDILGTFTPKIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaaactttccgggaaggaccttatcaaattgggcttcccacagaataatgca
ataaatattgccttagggcaaatacaacgttatagaaagcgtgataaaaaagaagcgata
ctggcggatgccagacaggtactcctttcgcccgaacaatttctgggtgatggaatatgg
ggcaaagtagcggaaggactggtcagacccgtcgaagtacgcttgcagcaattgagaact
tcaagagttgccttcagcatatttggggagaatgaaatcgatgaacaggcaaaacgccag
ctgtacgatgcattgaagctgcctgtagccgttagcggagcattgatgcctgacgcacat
tccggttacggactgccgataggtggggtgctggcaacagataacgctgtgattccgtat
ggcgttggtgtagatatcggttgtagaatgagtctctctgtctttgatctgcctgcgagc
tatctgaaaggcaaaagattccaactgacgaatatgcttttagaacagacctgctttggt
atgtacgagacgcataagaacagggcagatcatgagattttttcccgaaaggaatttcag
gaaataccaattctcaaaaatctgctgggtaaagcctggaagcagttggggacttcggga
ggcggcaaccacttcgttgagttcgggatagtgaatctgaacaatccaagaccggagtgg
aaactcccggcgggtgaatatgtagccttattgtcccatagcggctccaggggattaggg
gctaatatcgctaaacattatacctacctcgctgcaaagcaatgtcctctgccccggtct
gtacagcatctggcttggttagatctggatacacatgatggccaggagtattggatggct
atgaatctggctggtgactatgcaagtgcctgtcatgatgatatccaccggcgcatagct
aaagctctgggtaaacgtccggcatttaaggtagagaatcatcacaattttgcctggaaa
cagctgatcgacggaaaggaatgtatagtacaccgtaaaggagctactccggcagcaaaa
ggagagctggggattatcccgggatccatgactgctccgggatatattgtggtagggaaa
ggaaatgagagcagtttgcaatctgcttcgcatggagcaggaagactcttgtcaagggct
gcatgtaaagcttctttcacacctggtcaggtgcaaaagctacttaaagataccgatgtc
gagcttgtagggggaagtgtggatgaagccccgatggcttacaaagatatccgcaaagta
atcgcacttcaatccgaattagtggatatactggggacgtttacacctaaaattgtgcgg
atggatcgatag
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