Sphingobacterium spiritivorum: I6J01_12655
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Entry
I6J01_12655 CDS
T07566
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sspi
Sphingobacterium spiritivorum
Pathway
sspi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6J01_12655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspi03019
]
I6J01_12655
03009 Ribosome biogenesis [BR:
sspi03009
]
I6J01_12655
Enzymes [BR:
sspi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I6J01_12655
Messenger RNA biogenesis [BR:
sspi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6J01_12655
Ribosome biogenesis [BR:
sspi03009
]
Prokaryotic type
rRNA helicases
I6J01_12655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QQT34192
LinkDB
All DBs
Position
complement(3039522..3041333)
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AA seq
603 aa
AA seq
DB search
MNPFLELGIRHEVVNAISELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLP
LLEQLDFSQKHPQALVLCPTRELCLQIAKDLEKFAKYIDGVHVVAVYGGANISDQLRQIR
RGVQIVVATPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFQEDINNILSETPEEKKT
WLFSATMPREVRRIAQNYMTDPVELTVGTKNTGNANIEHHYYLIRAKDKYAAFKRIVDSN
PEIFGIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQLLIATD
VAARGIDVNDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKIRHIEKI
IGKPFERKQVPQGAEVCEKQLFSIVSKIENVEVNDDQITPFLPAIMENLEALSKEDIIKR
FASLEFNRFLDYYKNAPDLNIEARDNERGERGDRREDRSRGGSKGYTRLFMNLGSVDEFT
RGDMLGFICNNAKISGKSIGKIDLKGVFTFFEVQDEEVEKVFSGFQNVDFNGRNVRIEVS
GEGRSESRGGGRSRGGDRGGRREGGYRGGERRSGGERRDRRDGGNGGGFRDFSGKRKESK
SKY
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaacccatttttagaactgggaatccgtcatgaagttgttaatgccatctctgagtta
ggttttgaaaaaccttctcctattcaggaaaaagccattcctgttttactgactggtaac
gacgattttgtcggattagcccaaactggcacaggaaagaccgcggcatttggtcttcca
ttattagaacaattagacttttctcaaaaacatcctcaggcgttggtattatgtccaaca
cgtgaactttgtttgcaaattgcgaaagatttagaaaaatttgcgaaatacatcgatggt
gtacatgtcgtagcggtatacggaggtgcaaatatctctgaccaactacgtcagatccgt
cgtggtgtacaaatcgtagtagcgactcctggtcgtatgcttgatatcattggccgtaat
gccattgatttctccaatgtaaaatatgttgtattagatgaagcggatgaaatgcttaac
atgggctttcaggaagacatcaacaatatattgtcagaaactccggaagagaaaaaaacc
tggttgttttctgcaacaatgcctagggaggtacgtcgtatagctcaaaattatatgaca
gacccagtagaattgactgttggcaccaaaaatacaggtaatgccaatatcgaacaccac
tattacctgatcagagcaaaagataagtatgctgctttcaaacgtatcgtcgattccaat
cctgaaatcttcggtattgtattctgccgtaccaagatcgaaacgcaagaaattgctgaa
gccttgatcaaagatggttataatgcagattcgttgcatggtgacctttcacaacaacaa
cgtgataaagtcatgaaacgttaccgtgaccgtagcttacaattgttgatcgcaacagac
gtagccgcacgtggtattgacgtaaatgatgtaacacacgtaatcaacttctcccttccg
gatgaagtagagaattacacacaccgttcaggccgtacagcccgtgcaggtaagacaggt
atctcgctttcattggtaaatgtgaaagaattaagcaaaattcgtcacattgagaaaatt
attggtaaacctttcgaaagaaaacaagtacctcagggtgcagaagtttgtgaaaaacaa
ttattctcgatcgtaagcaaaattgagaatgtagaagtcaatgatgatcagattactcct
ttccttcctgctattatggaaaatctggaggcactgtcaaaagaagatatcatcaaaaga
tttgcatcattagaattcaacagattcctggattattataaaaatgctccggatctgaat
attgaagcacgtgacaacgaacgcggtgaacgcggagacagacgtgaagatcgctcacgc
ggtggttctaaaggatatacacgccttttcatgaacttaggttcagtagacgaatttaca
cgtggagacatgttaggatttatctgcaacaacgctaagatctccggtaaatcgatcggt
aaaatcgatcttaaaggagtgttcacattctttgaagtacaggacgaagaagtagagaaa
gtattctccggattccagaatgtagatttcaacggacgtaatgtacgcatcgaagtttct
ggtgaaggcagaagcgaaagccgtggtggcggaagaagtcgtggtggagaccgcggtgga
agacgtgaaggcggatatcgtggtggcgaacgcagaagcggtggtgaaagacgtgatcgt
cgtgatggaggaaatggcggtggcttccgtgatttttccggaaaacgcaaagaatctaaa
agcaaatattaa
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