Sphingobacterium spiritivorum: I6J01_13585
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Entry
I6J01_13585 CDS
T07566
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sspi
Sphingobacterium spiritivorum
Brite
KEGG Orthology (KO) [BR:
sspi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sspi03016
]
I6J01_13585
Enzymes [BR:
sspi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
I6J01_13585
Transfer RNA biogenesis [BR:
sspi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
I6J01_13585
Prokaryotic type
tRNA splicing ligases
I6J01_13585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Pox_I6_C
Motif
Other DBs
NCBI-ProteinID:
QQT34359
LinkDB
All DBs
Position
complement(3250482..3251903)
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AA seq
473 aa
AA seq
DB search
MTQRINGNDLLALGYKENYSLGTALKINKKRLGLSREEMLNRYKEILGDPESFLSDPIFS
PLAQVIIDENNQPADETIPLNEDPKDYKIYGSEQIEDGAKHQMNIAMKLPVTVAGALMPD
AHQGYGLPIGGVLAVKNAVIPYGVGVDIGCRMALSVYDIPADKLTENKEIFQKAVLDNSR
FGAGQGFLKYQRSEHAVLDNILFDEHPLISTLKDKAWSQLGTSGGGNHFVEFGIIEFKEA
DKTSGIQAGTYVALLTHSGSRGLGATIAGHYTKIAKELCKLPYSASNLAYLDLNSEAGQE
YWLAMHLAGDYASACHEIIHTKMAEALGATVLAKVENHHNFAWKEKWHEEEVIVHRKGAT
PAGKGVLGIIPGSMAAPGFLVRGKGEQDAINSASHGAGRQMSRTQAIKTLSKKAWKQMLE
DHGVTLLGAGMDEAPMAYKNIHTVMEAQTDLIDVLATFSPKIVRMADDGSRED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgacacaacgaattaatggcaatgatttacttgccctgggatataaagaaaactattca
ttaggtaccgcgctcaagatcaacaagaaaagattaggattaagtagggaggaaatgcta
aaccgttataaagaaattctgggagatccggaatcttttctgagtgaccctattttttct
ccgctggctcaggtgattatagatgaaaacaaccaacctgccgatgaaacgattcctttg
aatgaagatccgaaggactataaaatttatggttcagaacaaatcgaagacggagccaaa
catcaaatgaatatcgcaatgaagctgccggtaacagtagccggtgcgctgatgcccgat
gcgcatcagggatacggtcttcccataggtggcgtacttgccgtaaaaaatgcagtcatc
ccttatggtgtaggtgtagatataggttgcagaatggctttatctgtttacgatatacca
gcggataagctaacggaaaacaaagaaatctttcagaaagcggtacttgacaattcacgt
tttggtgccggacaaggattcttaaaatatcagcgaagtgagcatgctgtcctggacaat
attttgtttgatgagcatcctctgatcagtacgctaaaggataaagcctggtctcaattg
ggaacttcaggaggaggtaaccattttgtggaattcggaattattgaattcaaagaggct
gataagacatcaggaattcaggccggtacttatgtcgcattactgacacactccggatcc
cgtggtcttggtgcaacgattgccggtcattacacaaagatcgctaaagagctatgtaaa
ttaccgtattcggccagcaaccttgcttatctggatctgaacagtgaggccggacaggaa
tactggctggcgatgcatcttgcgggtgattatgcttctgcctgccatgagatcatacac
acaaaaatggctgaagcactgggggcaacagtattggcaaaggtagaaaatcaccataat
tttgcctggaaagagaaatggcatgaagaagaggtcattgtacaccgaaaaggagcaact
cctgcaggtaaaggggtactggggattatcccgggatccatggctgcaccaggatttctg
gtaagaggcaaaggtgaacaagacgctattaattctgcttcccacggagcaggacgtcag
atgtcacgtacacaggccatcaagactttatccaaaaaagcatggaaacaaatgctggag
gatcacggagtgactttgcttggtgccggaatggatgaagcgcctatggcttataaaaat
atccatactgtgatggaagcacagacagatctgatcgatgtactggctactttctcacca
aaaattgtaagaatggctgatgacgggagccgtgaagactaa
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