Salvia splendens (scarlet sage): 121740940
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Entry
121740940 CDS
T07627
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121740940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121740940
03009 Ribosome biogenesis [BR:
sspl03009
]
121740940
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121740940
Spliceosome [BR:
sspl03041
]
Complex A
U2 snRNP components
U2 related factors
121740940
Complex B
121740940
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
121740940
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
90S particles
Helicases
121740940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
SRP54
T2SSE
Flavi_DEAD
AAA_30
AAA_7
SLFN-g3_helicase
AAA_29
Motif
Other DBs
NCBI-GeneID:
121740940
NCBI-ProteinID:
XP_041989534
LinkDB
All DBs
Position
7:6615839..6620083
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AA seq
728 aa
AA seq
DB search
MGTERKRKVSLFDVVDETAVPGKFPRANGSDRMAAAALPSTINKWNSKPYSQRYYEILEK
RKTLPVWHQKDEFLQVLRANQTLILVGETGSGKTTQIPQFVLDAIELESADKRKKYMVGC
TQPRRVAAMSVSRRVAEEMDVAIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL
LERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLM
KVPGRLHPVEIFYTQEPERDYLEAAIKTVCQIHLCEPPGDILVFLTGEEEIEDACKKIGK
EIANNGDQVGPVKIVPLYSTLPPAMQQKIFEAAPPPAREGGPAGRKIVISTNIAETSLTI
DGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSF
HNDLVPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALD
DDGNLTKLGEIMSEFPLDPQMSKMLVVSSEFNCSNEILSVSSMLSVPNCFVRPRDAQKAA
DEAKARFGHIDGDHLTLLNVYHAYKQNKEDPQWCYENFVNHRALKSADNVRQQLARIMAR
FNLKLCSTDFNSRDYYDNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHK
PEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPNCEAKRQLEKLYKKRENA
KDESRSKK
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgggcacggagagaaagaggaaggtgagtctattcgacgttgtggacgagaccgccgtg
ccggggaaatttcccagggccaacggcagcgacagaatggccgcggcggcgctgccctcc
acgataaataaatggaactcgaagccttattcgcagagatattatgagattttggagaaa
aggaagactctgcccgtgtggcaccaaaaggatgagtttttgcaggttcttagagctaat
cagacgcttatccttgtgggtgaaaccggtagtggtaaaacgactcagattcctcagttt
gtgctggatgccatagagctagagtcagctgataagcgcaaaaagtacatggtcggatgt
actcagcctcggagggtggctgctatgtctgtttcaaggagagttgctgaagagatggat
gtggctattggcgaagaagtaggttatagcattcgtttcgaggattgcagcagtgctcga
actgttttgaagtacttgacagatggtatgcttttgagagaagccatgaccgacccactc
ctagagagatacaaagtgataattcttgatgaggcccatgagaggactttggcaacggat
gttttatttgggcttctcaaggaggtgttgaaaaataggcctgaccttaaactagttgtc
atgagtgctactcttgaggcggagaagtttcaaggttacttctttggtgcaccactaatg
aaagttcctgggaggctccaccctgtagagattttctatacccaggagcctgagagagat
taccttgaagcagctataaagactgtgtgtcagatacacttgtgtgaacctcctggtgac
attcttgtcttccttactggtgaagaagaaattgaagatgcttgtaagaaaattgggaag
gaaatagccaataatggggatcaagttggaccggtgaaaatagtccctttgtactctaca
cttcctccggcaatgcagcagaagatttttgaagctgctccaccaccggcaagggaaggt
ggccccgcaggaagaaagattgttatttctaccaatattgctgaaacatctcttacaatt
gatggcatagtttatgtcatagaccctgggtttgcaaaacaaaaagtttataatcctcga
attcgtgttgaatctctcttggtctctcctatatcaaaggctagtgcccatcaacgatct
ggacgtgctggaagaacacagcctggcaagtgctttagactgtacacagaaaggagtttt
cataacgaccttgtaccgcagacgtatcctgagatattaaggtcaaatcttgcaaatacc
gttttgactttgaaaaagttgggaatagatgatctggtccattttgattttatggacccg
ccagctcctgagacacttatgagagcattggaggtcttgaattacttgggagcccttgat
gatgatgggaacctgaccaagttgggtgagataatgagtgagtttccattggatcctcag
atgtcaaagatgctggttgttagttcagaattcaattgttcaaatgagatcctttcagta
tcttcaatgctttcagtacccaattgcttcgtccggcctagggatgctcaaaaagctgct
gatgaagcaaaagctcgttttggtcacattgatggagatcatctcacgctgttgaatgtg
tatcacgcttacaaacaaaataaggaagatccacaatggtgctacgagaactttgtcaat
catagggctcttaaatcagcggacaatgttagacagcagctggctaggatcatggccaga
ttcaatttgaagctctgtagcacagattttaacagccgtgactactatgacaatatcagg
aaggctatgcttgctggatacttcatgcaggtcgcccatttagagcgcaccggccactat
cttactgtgaaagacaaccaagttgttcacttgcacccttcaaattgcctggatcataaa
cctgagtgggttatatataatgaatatgttctcacaagcaggaatttcattcgtaccgtg
acagatattcgtggtgaatggttggttgacattgcaccgcattactatgatctctcaaac
ttccccaactgcgaggcaaagcggcagctggaaaaactgtataagaagagggagaatgca
aaggatgaaagtcgaagtaagaaatga
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