Salvia splendens (scarlet sage): 121741503
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Entry
121741503 CDS
T07627
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121741503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121741503
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121741503
mRNA degradation factors
5'-3' decay
Lsm complex
121741503
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
121741503
NCBI-ProteinID:
XP_041990208
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Position
7:13957350..13960029
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AA seq
132 aa
AA seq
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MSSSMSWAEPADVYLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANVVLEGACERLI
VGDLYCDIPLGLYVMRGENVVLIGELDPLKMELPPNMVRVSEPEIRSAQKVEREASELMG
TMKKRMDFLDMD
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatcaatgtcttgggcggaaccagcggatgtctatctctctacttctcttgcc
agttatcttgacaagaaacttcttgtgttacttcgagatggacggaaacttttagggatt
cttcgatcgtttgatcagtttgctaatgttgtcctagaaggtgcatgtgagcgtcttatc
gttggtgatctatattgcgacattccattaggtctatatgtaatgcgtggagaaaatgtt
gttttgattggggagctggacccactaaagatggaactacccccaaatatggttcgtgtt
tcagaaccagagataagaagtgcacaaaaagtggagagggaggcgtcggagctcatgggt
accatgaaaaagaggatggatttccttgatatggattga
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