Salvia splendens (scarlet sage): 121741510
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Entry
121741510 CDS
T07627
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121741510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121741510
Spliceosome [BR:
sspl03041
]
Complex A
U1 snRNP components
U1 related factors
121741510
Complex B
121741510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
121741510
NCBI-ProteinID:
XP_041990224
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All DBs
Position
7:3307205..3318390
Genome browser
AA seq
1086 aa
AA seq
DB search
MANNPPSAGMQPRITGHIPPPNSLPPMSMQFRPMIPPPPSQPFGPVAPQQFQPGGQSNIG
MPPHPPQLQYPQAVPPLPSQLPPSSQPPPPSQLPPPSQPPLPSQPPPQRAGLPGHSLPQG
PPPPPQPDFQHNRVVMSASPAQLQFSNNYMQSYGGPRVPHMPYNLSSSSGGQQQMNVDPS
VQHLPMSQTDTPNFPSGVQSWFPSGSQDMQSTMIMQQTVEQSSGEQAWFSTGNQNIKPLT
PLKQNGEQNSAGQQWLPDGTHNTKSATPQLTEERSAGVVKNTMPGGPDLDEKASSDWREH
TTREGKKYFYNKRTRISSWEKPLELMTPTERADASTDWREFTSPEGRRFYFNKVTKQSKW
RMPDEVKSSRERMNTTLHEETPAVRDADSHTSAALSTSANEASTSNTNNLSVLPEEVVVS
SPVAETPAVDPEHAVASELLSVTQEDTANLASDDTPVHAPQEISASVVLSDTPAPTATPT
AITSPTEMPDKSPQEAASSSIKTSGGVTEEENKTAVSGGINAPEGKKLEHVPLVYESKEE
AKNAFKALLESANVGSDWTWDQAMRVIINDRRYGALRSLGERKQTFNEFVGQRKKQEAEE
RRFRQKKARQDFKKMLQEAKDLTSSTRWSKTISMFEKDERFQAIERAKDCEDIFEEHLEE
LKKKERTKALEEHKRHKLEYLEFLKSCDFIKASSQWRKVQHRVEADQRCSRLEKIERLEI
FQEYIRDLEQEEEEQRKLRMEEQRKAERKNRDEFRKLLEEHVANGILTANSRWRDYSTKI
KDAPAFLAISSNEAGSSAKDLFDDVIDDLEKQYMEDKEKIEEAMKTEKLSLSSTWTFEDF
EILLSKERSSKPVSDINLKLIFDELMEIAKEKEDKEAKKHKRLTEDVYRFFFTSKEISSS
SKWEDCKFLVEDRFVGEESFFEEIFNKVILDLKEKTKEKERKRKEEKAKKERKDKERREK
SRSSKDRGSGSRKTKDRRKIDETDSDGSDSYSLEETKSSRDRIRRHKKRHSDDTSFDDDE
KDRQRSHRHNADSKKPKKEERQSSSGEAETYSQSKKQKRDHRDGSNKHTDNEEHKIREFG
EDGEVL
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggcgaataaccccccgtctgcaggaatgcagcctcgtataactggtcacattcctcct
ccaaattctcttccacccatgtcaatgcaatttcgtccaatgattccaccaccaccatca
cagccatttggtccagtggctcctcagcaattccagccaggtggtcagtcaaacataggg
atgcctcctcatcctccccaactccagtatcctcaagcagtgccacctctaccatctcag
ctacctccttcatcacagccgcctccaccatcacagctgcctccaccatctcagccacct
ctgccatcacagccaccgccacaaagagctggtcttccagggcatagtttgcctcaagga
ccaccaccacctccacagcccgatttccagcacaacagagttgtgatgtctgcttctccc
gcacaactacaattctctaataattacatgcaaagttatggtggtccaagagtccctcat
atgccatacaacttatcatcatcatctgggggtcaacaacaaatgaatgtagaccctagt
gttcagcacctaccaatgtcccaaacagatacgccaaacttcccttctggagtacaatct
tggtttccttctgggagtcaagatatgcaatcaactatgattatgcaacaaactgtggag
caaagttctggagaacaagcttggttttcaactgggaaccagaacataaagcctctaacg
cctttgaagcagaatggggagcaaaactctgcaggacaacagtggttgccagatggaact
cataataccaaatctgcgactcctcagttgaccgaggaacgaagtgctggagtggtgaaa
aatactatgcctggtggccctgacctggatgagaaagcttcttcggattggagagaacac
acaactcgtgaagggaaaaaatacttctacaacaaaaggacaaggatttcttcttgggag
aagccattagagttgatgacaccaactgagagggccgatgcatctacggactggagagaa
tttactagtcctgaggggagaaggttttacttcaataaggtgactaaacaatctaaatgg
cgtatgccagatgaagtcaagtcatctcgtgagcggatgaatacaactctgcatgaagaa
acacccgcagtaagggatgctgattcacatacttctgctgcactttccacctctgcaaat
gaagcatcaacttccaatacaaataatttatctgtattgcccgaagaagtggtggtgtca
agccctgtggcggaaacacctgctgttgatcctgaacatgcagtggcttctgaactatta
tcagtcacacaagaggacactgctaatttagcatcagatgacacgccggtgcatgctcca
caggaaatttctgcatcagtggttctatcagacacacctgcacctactgctacccccact
gccataacttcgcctacggaaatgccagataaatctcctcaggaggctgcgtcttcttcc
ataaaaacttctggtggggttacagaggaagaaaataaaactgcagtgagtggaggcatt
aatgcacccgaagggaaaaagctagagcatgtccctctggtttatgagagtaaagaggag
gcaaagaatgcttttaaagctcttttggagtctgctaatgttgggtctgactggacttgg
gatcaggccatgagagtaataataaatgaccggagatatggtgcactaaggtctcttgga
gagagaaagcaaactttcaatgagtttgtggggcaaaggaaaaaacaggaagctgaagag
agacgttttagacagaagaaagcaagacaagatttcaagaaaatgttacaggaagctaaa
gatttgacatcatcaactagatggagcaaaacaatatctatgtttgagaaagacgaacgt
tttcaagctattgaacgggccaaagactgcgaagacatctttgaagagcatttagaggag
cttaagaaaaaggaacgaacaaaggctttggaggagcataagcgtcataaattggaatat
ttggaatttctaaaatcctgtgactttatcaaggcaagtagccaatggcgaaaagtgcaa
caccgtgtagaagctgaccagagatgctcacgccttgaaaagatagagcgcctggaaatc
ttccaggaatacattagagatctagagcaggaagaagaggaacaacgaaaattgcgaatg
gaggaacagagaaaagcggagcgtaaaaatcgtgatgagtttcggaagctactggaagaa
catgtagcgaatggcattcttacagcgaattctcgttggcgagactatagcacaaagatt
aaagatgctcctgcatttctagctatatcttcaaacgaggcaggctcctctgcaaaagat
ctatttgatgatgttatagatgaccttgagaaacagtatatggaggataaggagaaaatc
gaagaagccatgaagactgaaaagctatccttgtcgtcgacttggacttttgaagacttc
gaaatcttactttctaaagagcgaagctcaaaaccagtatcagatatcaacctgaagctc
atatttgatgagctaatggaaattgccaaggagaaagaagataaagaagctaagaagcat
aagcgcctcacggaagatgtttatcgcttcttttttacttcaaaggaaatatcatcatct
tccaagtgggaggactgcaaatttcttgttgaagataggtttgttggggaagagagcttt
tttgaggaaattttcaataaagtcattcttgatcttaaagaaaagacaaaggaaaaggag
cgaaagcggaaagaggaaaaggctaaaaaggagcgaaaagataaagagaggagggaaaaa
agtagaagtagtaaagacagaggaagtggtagcagaaagacgaaagacagacgcaagatt
gatgaaacagatagcgacggatctgattcgtatagtctagaagagacaaaaagttcgagg
gacaggatcaggaggcataagaagaggcattcagatgacacgagtttcgatgatgacgag
aaagaccgtcagagatctcatagacacaatgctgattccaaaaagccaaagaaggaggaa
aggcaatcgtcaagtggtgaagcagaaacgtacagccaaagcaagaaacagaagagggac
cacagggatggttctaataaacatactgataacgaggaacataaaatccgggaatttggt
gaggatggagaggtcctgtag
DBGET
integrated database retrieval system
