Salvia splendens (scarlet sage): 121741698
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Entry
121741698 CDS
T07627
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121741698
03015 mRNA surveillance pathway
121741698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121741698
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121741698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
DUF2457
Motif
Other DBs
NCBI-GeneID:
121741698
NCBI-ProteinID:
XP_041990514
LinkDB
All DBs
Position
7:complement(28077264..28083611)
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AA seq
422 aa
AA seq
DB search
MAKPARGRPASPSGSVSRSSSRSRSRSRSRSISRSRSYSGSGSRSTSRSRSRSKSISSSS
SPSRSGSSHSPPPRKSPADGVKRGRSPPPQTKKSSPPPRKASPAPESLVLHVDQLSRNVN
ENHLKEIFGNFGEVVNVRLAMDYAVNLPKGFAYVEFKIRAEAEKAQLYMDGAQIDGKVVR
AKFTLPERKKVASPPKAVATTSRRDASKAEETATDGDRDGGKRARDASPRRKQPSPLRRR
SPGPRRGSPRREQDSPPPPRRRADSPYRRADSPPIRRRPPLSPARGRSPSPPRRFRSPPR
SSPRRIRGSPVRRRSPPPPRRRSPRRLRSPPRRSPVGRRRSRSPIRRPARSPSRSPSPRR
GRVPPSRRGRSYSLSPSPRKGPRRVSRSRSRSRSPRRPIRGRNDSSSSSSSSSTSSSPPP
KP
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atggctaaacccgcccgcggccgcccggcgtcgccgtcgggatcggtttctcgctcttcc
tcccgctctcgttcccgttcccgttcccgttccatttctcgctcccgttcttactccgga
tcaggctcccgctccacttccaggtcgcgctcccgctctaaatccatatcctcctcctct
tctccttctcgtagcggcagctcccacagccctccgccgaggaaaagccctgctgacgga
gttaagagaggtcgctcacctccaccacaaaccaagaaatcttccccacctccaaggaaa
gcttcgcctgctcctgaatctcttgtgctgcatgtggaccagcttagtaggaatgttaac
gaaaaccacttgaaagaaatatttggtaattttggtgaagtggtgaatgtacggcttgca
atggattatgctgttaaccttccaaaaggatttgcatatgttgagttcaagattagggca
gaagctgaaaaggcacagttatatatggatggtgctcaaatagatggtaaagttgttcgg
gcaaagtttacattacctgagagaaagaaggttgcttctcctcccaaagctgttgccacc
acatcaaggagagatgcctcaaaagctgaagagactgctacggatggtgatagagatgga
ggaaaacgtgcaagagatgcttctcctcgtcgaaagcaaccatctcctcttcgaagaaga
tctcctgggccacgaagaggatctcctagacgagagcaagattctccacccccacctcgt
cgtagagctgattccccttaccggcgagctgattcccctccaatcaggagaaggcctcca
ttgtctcctgctagaggccgctcaccttctcctccgagacgcttccggtcaccaccaagg
tcatctccaagaagaatacgcggtagtcctgttcgtcggcgatcccctcctccacctagg
cgacgttcaccaaggcgtcttcgaagtcctccacgaaggtctcctgttggtcgcagacgt
tctcgctctcctattagaaggccagctcgttcgccatcacgatcaccctcccctagaaga
ggtcgagtgccgccttctagacgtgggaggtcttattctttgtcgcctagtccgcgcaag
ggacctcgcagggtatcacggagccggagccggagccggagccctcgaaggcctattaga
gggaggaatgacagcagcagcagcagcagcagcagcagcaccagcagttctcctccgcct
aagccataa
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