Salvia splendens (scarlet sage): 121741770
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Entry
121741770 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121741770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121741770
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121741770
Spliceosome [BR:
sspl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121741770
Complex B
121741770
Complex C
U2 SnRNP specific factors
121741770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121741770
NCBI-ProteinID:
XP_041990593
LinkDB
All DBs
Position
7:6484917..6488999
Genome browser
AA seq
766 aa
AA seq
DB search
MSKRKFGFEGFGINRQATYNFERSQQPQRLYVPSPSRGGDEDDDIDNIEYADDREAANDV
VSDSNNGEAAEEDEVDPLDAFMEGLQEEIKAAPPPKAKDKLDKYKDDVEDDPMESFVMAK
KDLGLQLAADALHAGYNSDEEVYAAAKAVDAGMLEYDSDDNPVVLDKKKIEPIPPFDHSS
VDYEAFNKDFYEEKPSISGMSEQDVAEYRKTLAIRVSGFDVPRPVKTFEDCGFSRELMKA
IAKQAYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTASFVLPMIVHAMDQPELAKEEGP
IGVICAPTRELAHQIYLEAKKFSKSCGIRVAAVYGGMSKLDQFKELKAGCEIVVATPGRL
IDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEK
LAREILSDPVRVTVGEVGMANEDITQIVHVMPSDAEKLPWLLEKLPVMIDEGDVLVFASK
KAAVDEVEAQLLQRGLKVAALHGDKDQSSRMEILQKFKSGIYHVLVATDVAARGLDIKSI
KSVVNFDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNSLIAAGQNVSS
ELMDLAMKDGRFRSKRDARKGGGKRANGRGGGGGGGRGVRGVDFGLGIGYNTESKAELTP
APSRSATVNSLRTGAMAQFRSSFVPASSTSQDQFSSGSRPNNRPVLRGFVSGGTIGGDIP
PVKVQSVTPTTSASNNTPNSGEIRKQTHSERDNKARERRRPSGWDR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacgaaaattcggattcgagggcttcggcatcaatcgccaagctacctacaac
ttcgagcgttcacagcagcctcagcgcttgtacgttccctctccttcccgcggcggcgac
gaagacgacgacatcgacaatattgagtatgccgacgatcgtgaagctgcgaacgacgtg
gtttcggacagtaacaacggcgaagcggctgaagaagacgaagttgatcctcttgatgcg
tttatggaagggctgcaggaagagattaaggctgctccgccgcccaaggccaaggataag
ctggataagtacaaggatgacgtcgaagacgatccaatggagagttttgtgatggcgaag
aaggatttggggctacagttggccgcggatgctctgcacgctggttacaattcagacgag
gaggtttatgcggcggctaaggcggtggatgcagggatgcttgagtatgattctgatgat
aatcctgttgttctcgacaagaagaagattgagccgattcccccgtttgatcatagctca
gttgattacgaggcgtttaataaggatttctacgaggagaagccttctatatcaggtatg
agtgagcaggatgttgcggaatacaggaagaccttggctatccgtgtttctggtttcgat
gtaccacgacctgttaagacttttgaagattgtggattctctagggaactaatgaaagcc
atagcaaaacaagcatatgaaaaacctacaccaatacagtgccaagctttacctattgtg
ctttctggaagagacataattggaatagcaaaaacaggctctggaaagactgcttcattt
gtgcttcctatgattgtccatgctatggatcaacctgagctagctaaagaagaaggtccc
attggagtgatatgtgcacctaccagggaattggctcatcaaatatatttggaagctaag
aagttctccaaatcttgtggcatccgtgtggctgcagtttatggtgggatgtcgaagctt
gatcaattcaaggaactgaaggcagggtgtgagatagttgtagctactccagggagattg
atagacatgattaaaatgaaggcgttgaccatgctgagggcaacctacttagtacttgat
gaagctgatcgaatgtttgatcttggttttgagcctcaaataaggtcaatagtgggtcaa
ataaggccagatcgtcaaacattactcttttcagcaactatgcctcgaaaagttgaaaag
cttgctagggagattctatctgatcctgtaagagtaactgtaggagaggtgggtatggcc
aatgaggatattacccaaattgtccatgtgatgccatcagatgcagaaaagttgccctgg
cttctcgagaagcttcctgtaatgatagatgaaggtgatgttctggtctttgcctcaaag
aaggcggcagttgatgaagtagaagcacaactgcttcagagaggtcttaaggtagcagca
cttcatggtgataaggatcagtcttctcgtatggagatattacaaaaattcaagtctgga
atataccatgtacttgttgcaactgatgttgctgctcgaggtcttgatatcaaatccatt
aaatctgtcgtcaactttgacatagctaaagacatggacatgcatgtacatcgcattgga
aggacaggtcgtgcaggggataaagatggaactgcatacaccctgataacacaaaaggag
gcaagatttgctggtgaattagttaacagtttgattgctgctggtcaaaatgtatcctca
gagctcatggatcttgctatgaaggatgggcggttcagatcaaaacgtgatgcacgaaaa
ggaggtggtaaaagagctaatggaaggggaggtggtggtggcggtggcagaggagttcgt
ggtgtggacttcggtttgggcatcgggtataataccgaatcaaaggctgaattaacccct
gcacctagtcgttctgcgacagttaactcactgaggacaggggcgatggcacaatttaga
agcagtttcgtacctgcatcatcaacttcccaggatcaattcagttcaggttcacgaccc
aataatcggcctgttttacgtggctttgtatccggtgggactattgggggtgatattcct
cccgtaaaagtacagagtgtgacacctacaacatctgcgtcaaataataccccaaactcg
ggagaaattagaaagcagacacattctgaaagagacaacaaagcaagagaaagacgaagg
ccctctggctgggatcgttag
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