Salvia splendens (scarlet sage): 121741779
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Entry
121741779 CDS
T07627
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121741779
09123 Folding, sorting and degradation
03018 RNA degradation
121741779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121741779
03041 Spliceosome [BR:
sspl03041
]
121741779
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121741779
mRNA cycle factors
Stress granule specific factors
121741779
Spliceosome [BR:
sspl03041
]
Complex C
Other components
Complex C specific factors
121741779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_10
RRM_3
RBD_DEAH11
RRM_7
RRM_Nup35
RRM_MARF1
HPS3_C
Motif
Other DBs
NCBI-GeneID:
121741779
NCBI-ProteinID:
XP_041990614
LinkDB
All DBs
Position
7:3670601..3674698
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AA seq
644 aa
AA seq
DB search
MAAQVQMQSQVPVVNAAAASGGAPFVTSLYVGDLEVNVTDSQLYNLFSNMGDVVSVRVCR
DLTSRRSLGYGYVNFGNSQDTERALMELNFTPLNGKPIRVMYSHRDPSVRRSGNGNIFIK
NLDKDIDHKALHETFSSFGSILSCKVATNSSGQSLGYGFVQYATEESAQKAIEKLNGMLL
NGKQVYVGPFVRKQEREMEVDKTKFTNVFVKNISETTTEEDLQKMFGEFGQITSVVVMRN
DDGTSKCFGFVNFEDADDAGRAVDTLNGIKIDNKELYVGRAQKKSEREVQLKNQFEQSLK
EAVDKSQGSNLYVKNLDDSINDDQLKELFASYGSITSCKVMRDPKGISRGSGFVAFSSPE
EAARALSEMNGKMIASKPLYVALAQRKEDRRAQLQAQFSQMRPITMAPTVAPRMPMYTPG
GLGLGQQIFYGQAPPAMIPPQPGFGYQQQLVPGMRPGGPLMPNMFVPMVQPGQQGPHPGG
RRGNAGPMQQGPQPVPVMQQQMVPRGRGSRFPPGRGMPDPMQGMAGGMLPVPYEMGGLPL
RDAGISRPVPIGALASALANASPSEQRTMLGENLYPLVEQLKPETAAKVTGMLLEMDQTE
VLHLLESPEALKAKVAEAMEVLRSVSQQQSGSPAEQLATLSLNE
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggccgcccaggttcagatgcagtctcaggttccggtggtgaatgcggcggcggcttct
ggtggcgcgccgttcgtgacctcgctgtacgttggcgatctcgaagtcaacgtgactgat
tctcagctctacaatctgttcagcaatatgggagatgtggtatcggttagggtctgtagg
gatttaaccagccggcgctcgctaggatacggatacgtcaactttggcaactctcaggat
accgaaagggcactgatggagctgaacttcactcctctcaatggcaaacccattagggtt
atgtattctcatcgagaccctagtgtgcgccgtagtggcaacggaaatatatttatcaag
aatttggacaaggatattgaccacaaagctctgcacgagacattttcttcttttggttcc
atcctctcatgcaaagtagcaactaattcttctggccagtcattaggctatggctttgtg
caatatgccactgaagaatccgctcagaaagctattgagaagcttaatggaatgttattg
aatggaaaacaagtttatgtcggaccttttgtccgcaagcaagaaagagagatggaagta
gacaagacgaaattcactaatgtgtttgtcaaaaatatatctgaaacaacaactgaagaa
gatcttcagaagatgtttggtgaatttgggcaaattaccagtgtagttgtgatgagaaat
gatgatggaacttccaaatgttttggatttgtcaactttgaagatgcagatgatgctggc
agagctgttgacactttaaatggtataaaaattgataacaaggaactgtatgttggtaga
gcccagaaaaaatctgagagggaggtacaacttaagaaccaatttgagcagagtttgaag
gaagctgttgacaaatcacagggttccaacctgtatgttaagaatctggatgatagcatc
aatgatgatcagcttaaggagttattcgcttcatatggttcaataacatcttgcaaggtt
atgcgggacccaaagggaattagcagaggttctgggtttgttgcattttcatcacctgaa
gaggctgccagagctctctctgaaatgaatggcaagatgattgctagcaaacctctttat
gttgcacttgctcagaggaaagaagatagaagagcacaactacaggctcaattttctcaa
atgaggccaattacaatggcacctactgtggctcctcgtatgccaatgtatacgcctggt
ggtcttggtctagggcaacagatattctatggtcaagctccacctgcaatgattcctcct
cagcctggatttggatatcaacagcagcttgtacctggtatgaggcctggtgggcctctc
atgccaaatatgtttgtccctatggttcaaccgggtcagcaaggtccacatcctggtgga
aggagaggtaatgctgggccaatgcaacagggccctcagcctgttcccgtaatgcaacag
cagatggttcctagaggacgtggttcccgcttccctcctggacgtggcatgcctgatcct
atgcaaggtatggcaggaggcatgcttcctgtcccatatgaaatgggtggcttgccattg
cgtgatgcaggaatctctcggccagttcctatcggggctctggcatctgcacttgcaaat
gcttctcccagtgaacaaaggacgatgttgggagagaatctgtacccacttgttgaacaa
ctgaagccagagacggcagccaaggttactggaatgctactggaaatggaccagacagag
gttctgcacttgttggagtcaccagaagctcttaaagcgaaggttgcagaggcaatggag
gtgctgaggagtgtgtcccagcagcagagcggctctccagctgagcagctggctacattg
tcattgaatgagtga
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