Salvia splendens (scarlet sage): 121741973
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Entry
121741973 CDS
T07627
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl04120
Ubiquitin mediated proteolysis
sspl04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121741973
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
121741973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121741973
Enzymes [BR:
sspl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121741973
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121741973
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121741973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
zf-C3HC4_2
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
EIF3I
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
zf-C3HC4
Beta-prop_HPS5
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_RFWD3
zf-C3HC4_3
zf-RING_2
WD40_like
Beta-prop_WDR75_1st
Beta-prop_DCAF12
zf-C3HC4_4
zf-RING_UBOX
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
zf-RING_5
U-box
DUF1664
Beta-prop_IFT122_2nd
YbfN
Sec23_helical
zf-rbx1
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
121741973
NCBI-ProteinID:
XP_041990902
LinkDB
All DBs
Position
7:complement(29947272..29954440)
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AA seq
673 aa
AA seq
DB search
MGDQTTSIGGPLVPTIKSEPADSSAGAPSPSPPHSEMEHDSDKDILCPICMQIIKDAFLT
ACGHSFCYMCIVTHLQNKSDCPCCSHFLTANHLYPNFLLNKLLMKTSAHQTAKTATPLEQ
LRQALERGCEASVKDLESLMSLLSEKKSKMEQEEAETNLQILLDFMLCLRKKKLDELNEV
QSDLKYIKEDIHAVERRRIELYRRRDRCSSKLRMLGDDPSSKSAWPSVVEKQSGATASRP
SLTPGQSRLTSGDLHSKKADVRSSASHLVLGKDSYGGSDIQNPSQSGQALARKRRVHAQF
NDLQDCYLQKRRYWAKQMPEQQGRDSLSSKREGYSVGLEDFQSVLSTFTRYSRLRVVAEL
RHGDLFHSANIVSSIEFDRDDELFATAGVSRQIKIFEFSSVVNEPADSQCPVAEMSTRAK
LSCLSWNKYAKNHIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSCTDPSMLVSG
SDDCKVKVWCTNQEASVINIDMKANICSVKYNPGSSIHVAVGSADHHIHYYDLRKVSQPL
YIFSGHRKAVSYVKFLSDDELASASTDSTVRLWDVKENVPLRTFRGHANEKNFVGLTANS
EYIACGSETNEVFVYHKAISKPAAWHKFNNSETEEGEEDAGSYFISAVCWKSDSPTMVTA
NSQGTIKVLVLAP
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgggagaccagaccacttcaattggcggccctctcgtgcctaccatcaaatcagagccg
gcggattcttccgccggtgctccgtcgccgtcgccgccgcactcggagatggagcacgac
tctgataaggacatcctctgccctatttgcatgcagatcatcaaggatgcctttctcact
gcctgtggccatagcttttgctatatgtgtatcgtcactcatcttcagaacaagagtgat
tgcccctgctgctctcatttccttactgctaatcacctctaccctaatttcctcctcaac
aagttattgatgaagacttctgctcatcaaacagctaaaactgctactcctttggaacaa
cttcgccaggcactcgaacggggatgtgaagcttcagtgaaggatctcgaaagccttatg
tctcttctttcagagaaaaaaagtaaaatggagcaagaagaagccgaaacaaatctacag
atcctgcttgattttatgctttgtctgagaaagaagaaacttgatgagctcaatgaggta
caatctgatctaaagtacattaaagaagatattcatgcagtggagagacgtcgaatagag
ttataccgtcgaagggatagatgttcgtctaaactaagaatgcttggtgatgatccttct
tccaaatcagcatggccgtcagtggttgaaaaacaaagtggtgctacagcctccagacct
tctctcacacctggccaatcccgccttacttcaggtgatcttcatagcaagaaagctgat
gtgagatcttctgctagtcatttggtactagggaaggatagttatggtgggtcagacatc
cagaatccttctcaatcaggacaggcattagcaaggaagagaagggtacatgctcagttc
aatgacctacaagattgttacttgcaaaagaggcggtattgggcaaaacaaatgccagag
cagcaagggcgtgactcactgagttcaaagagagaaggatactctgtaggtcttgaggat
tttcagtctgttctatcaactttcacaagatacagtcggttgcgggttgttgccgaacta
agacatggagatctttttcactcggctaacattgtatcaagcatagaatttgatcgagat
gatgaattatttgctacagctggagtatcacgacagatcaagatttttgagttttcatca
gtggttaatgaaccagcggactctcaatgtcctgtagcagaaatgtctactagagcaaag
ctaagctgtttaagctggaacaagtatgcaaaaaatcatattgccagcagtgactatgaa
ggcatagtaactgtttgggatgtgactactagacagagtgtgatggagtatgaggagcat
gagaaacgtgcctggagtgttgatttttcatgcacagatccttcaatgcttgtatctggt
agtgatgactgcaaggtcaaagtatggtgtacaaaccaggaggcgagtgtcataaacatt
gacatgaaggcaaatatatgttcagtcaaatataatcctggatccagcatccatgtcgct
gttggctccgcagatcatcacattcattactatgacttaagaaaagttagccagccactg
tatatattcagcggacacaggaaggctgtgtcatatgtgaaatttctgtccgatgatgag
cttgcttctgcttcaacagacagtacagtgcgcctatgggatgttaaggaaaatgttcct
ctgcgcacttttagaggccatgcaaatgagaagaactttgtggggctaacagcgaacagc
gaatacatagcatgtggtagcgaaacaaatgaagtatttgtctatcacaaggcaatatct
aagccggcagcatggcataaattcaataattctgaaacagaagaaggcgaagaagatgcg
gggtcgtacttcataagtgctgtgtgctggaaaagtgatagcccaactatggttacagca
aacagccaagggactataaaagtcctcgttctcgctccctga
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