Salvia splendens (scarlet sage): 121741987
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Entry
121741987 CDS
T07627
Name
(RefSeq) THO complex subunit 4A-like
KO
K12881
THO complex subunit 4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121741987
09122 Translation
03013 Nucleocytoplasmic transport
121741987
03015 mRNA surveillance pathway
121741987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121741987
03041 Spliceosome [BR:
sspl03041
]
121741987
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121741987
TREX complex
121741987
Spliceosome [BR:
sspl03041
]
Complex C
Other components
EJC/TREX
121741987
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121741987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
RRM_10
Motif
Other DBs
NCBI-GeneID:
121741987
NCBI-ProteinID:
XP_041990923
LinkDB
All DBs
Position
1:complement(10835200..10840475)
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AA seq
231 aa
AA seq
DB search
MSGAALDMSLDDLIKNNKKSGRGRAAGSGPARRPTNRFANRVTPYSAPKAPETAWGHDMF
SDGGRSSSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYVVHYDRSGRSKGTAEVLF
SRRQDAMAAIKRYNNVQLDSKPMKLELVGINITAPDAGAGGFTSAGSFGDSNVAPRSGQG
RGGFGRPRGGRGRGLGRGRGQGRGRRGGEKVSAEDLDADLEKYHADAMQTN
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcgctgcgctcgacatgtctctcgacgatctaattaagaacaacaagaaatct
ggcagaggtcgcgccgccggttctggccccgctcgccgccccacgaaccgtttcgctaat
cgcgtgacaccctattccgctcccaaggctcctgagacggcttggggccatgacatgttc
tcagatggcggtcgatcttccagtatagagacagggaccaagttgtatatttccaatttg
gattatggggtttcgaatgaggatattaaggaactgttttcggaggttggagatctgaaa
agatatgttgtacactatgataggagtgggcgatcgaagggtaccgctgaagtactcttc
tcaagacgacaagatgctatggctgctatcaagcggtataataatgttcagcttgacagt
aaaccaatgaaactagaacttgttggaataaacattacagcgcctgatgctggcgctgga
gggtttacttctgctggttctttcggtgattcaaacgtagctcctcgaagcggacaagga
agaggtggttttggaaggccacgagggggaagaggtcgtggattaggaagaggtcgtgga
caaggaagagggcgccgcggtggtgagaaggtatctgctgaagatcttgatgctgatcta
gagaagtaccatgcagacgcaatgcagacaaactaa
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