Salvia splendens (scarlet sage): 121742018
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Entry
121742018 CDS
T07627
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2-like isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sspl04812
]
121742018
Cytoskeleton proteins [BR:
sspl04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
121742018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_SCAP
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
eIF2A
Beta-prop_IFT122_1st
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_VPS8
VPS8_N
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
121742018
NCBI-ProteinID:
XP_041990962
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Position
7:complement(30714234..30721760)
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AA seq
821 aa
AA seq
DB search
MEKRGYKLQEFVAHAGNVNCLSFGKKNCRVFITGGDDQKVNLWSVGKPTSLMSLCGHTSP
VESAAFDSAEVLVVAGSSSGAIKLWDLEETKMVRTLTGHRSYCTAVEFHPFGEFFASGSM
DTNLKIWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF
KFHEGHIRTIEFHPLEFLLATGSADKTVKFWDLETFEMIGSARREAAGVRSIAFHPDGRT
LFCGLDDSLKVYSWEPVVCHDSVDMGWSTLGDLCIDDGKLLGGAYHENTVAVWIADVSLV
EPYGTRFAQEQYDHSELKHESEVSPLEKEESRVKSKSNLKSTVPDSESKDIKTIYVDRVN
SISSKTAETVEVPKVVQTSDSSQISKIGVQKPNPRASSPPSDSMEISNVKIQKHSPPETL
PPSEPKKISTIGTQKRGPAASLSAKVNVPSVNRSIIMPSIIPRDNTGKDSIGSRRESIGL
AKASSGMNSRSSHARRQSSSRLDMERMSVAIESLPSDNVRKPVVSRKDLNIRNRLFPDAN
SKDFSEGKESNNDTVVEKPDRTSLPATTSSDQALDSCKGASSIKVINGVAVVHGRTRSLV
ERFEGKEKIDVDDICTPDRTCGGAAIEPAETPSPQITDPKIDVRVQPTLDDNIVLENLMQ
SHDVLLSTFRSRLTKLQVVRHFWERNDVKGAINALKRLPDHSVQADVVGVLIERMEVITL
ELFSSLLPVLLGLLESKAERHASLSLEMLLKLVAVFGTVVRTTVSARRSVGVDLQAEERL
ECCRQCSSHLQNVQNMLPELVKRGGVLARYAQQLNLVLQQT
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggagaaacgcggatataagctgcaggaatttgttgcacacgctgggaatgtaaattgt
ttgagctttgggaaaaagaattgccgcgtatttattacaggtggagatgatcagaaagtg
aatctttggtctgttggcaaaccgacatctctaatgagcctgtgtggtcacactagtccg
gttgagtctgcagcctttgattcagcggaagttttagtggtagctggatcgtcttcgggg
gccataaaattgtgggatctggaagaaactaaaatggttcgcactcttaccgggcacaga
tcctattgtactgccgttgagtttcacccatttggtgagttttttgcatctggttccatg
gatactaatctgaagatatgggatattagaaagaaagggtgcatccacacatataagggg
catactcgagggattagtacaataagattcactcccgatggccgctgggtagtgtctggt
ggattcgataatgttgtaaaggtgtgggacctgactgctggaaagcttttgcatgatttc
aagtttcatgaaggacatattcgtacaatagaattccatccgcttgagtttcttttagca
acaggttcagcagacaaaacagtgaaattctgggatctggaaacatttgagatgattgga
tctgccaggcgtgaggctgcaggagtgagatctattgcatttcaccctgatggtagaaca
cttttttgtggacttgatgatagcttaaaggtttactcgtgggagcctgtagtttgccat
gattcagttgatatgggatggtcaacacttggcgatctttgcatcgatgatgggaaactt
ttaggcggtgcatatcatgaaaatacggttgcagtttggatagcagatgtttcgcttgtg
gagccttatggtacaagatttgctcaagagcagtatgaccactctgagctgaaacatgag
agtgaggtaagtcctttggagaaggaagaaagccgtgtaaagtcaaagtccaatcttaag
tctacagtgccagatagcgagtctaaggacatcaaaactatttatgttgaccgtgtgaat
tccatcagttccaagacagctgaaacagttgaagttcctaaggttgtacagacatctgat
tccagtcaaatcagcaaaattggagtgcagaagccgaatcctagagcaagttcgcctcca
tcagattccatggaaatcagcaacgttaagattcagaagcacagtccaccagaaactttg
cctccatctgaacccaagaaaatcagcactattggaacccagaagcgtggtcctgcagct
agcttgtcagcaaaagttaatgtgccgtccgttaatagatctattatcatgccaagcata
ataccccgagataacactggaaaagattcaattgggtctagaagggaatccattgggttg
gctaaggccagcagtggcatgaattctagatcatctcacgcacggaggcagtcaagcagt
aggttagatatggaaagaatgtcagtggccattgaatctctgccctctgataatgtgaga
aaacctgttgttagtagaaaggatctaaatattcgtaataggctgttccctgatgcaaat
tcgaaggacttttctgaggggaaagaatcaaataatgatactgttgtcgaaaagcctgac
agaacttcgctgccagccaccacatcaagtgatcaggctctcgattcctgcaaaggggcg
agttccattaaagttatcaatggagtggcagttgtgcatggaaggacacgaagtttggtt
gagaggtttgagggaaaggaaaaaattgatgtggatgacatttgcacccctgataggact
tgtggtggtgctgctatcgagcctgcggaaactccctccccccagattactgacccgaaa
attgacgtgagagtgcaacctactttggatgataatattgtcctcgagaatcttatgcag
agtcatgatgtactattgagcacatttcggtcaaggctgacaaagctgcaggtggttcga
catttttgggaaaggaatgatgttaagggtgctataaatgctttgaagagactgcctgac
cattcggtccaggcagatgtagttggtgttctgattgagagaatggaggttattacattg
gaactattttcaagcttgcttcctgtgcttttaggattattggaaagcaaagcagaaagg
catgctagtctctcgttggaaatgcttttaaagcttgtagcagtctttggcacagtagtt
cgtaccacagtttcagcacgtcgttcggtcggcgttgatcttcaagcagaggagagactt
gaatgttgcagacagtgctcatcgcatctgcagaatgtacagaacatgcttccagaactt
gtgaagagagggggtgtcctagcaagatatgcacaacaactgaacctggttcttcaacaa
acatag
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integrated database retrieval system
