Salvia splendens (scarlet sage): 121742168
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Entry
121742168 CDS
T07627
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121742168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121742168
03012 Translation factors [BR:
sspl03012
]
121742168
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121742168
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121742168
Translation factors [BR:
sspl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121742168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
AAA_19
AAA_16
ATPase
T2SSE
PhoH
ABC_tran
AAA_23
Myosin_head
Motif
Other DBs
NCBI-GeneID:
121742168
NCBI-ProteinID:
XP_041991158
LinkDB
All DBs
Position
7:complement(10480491..10493931)
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AA seq
1159 aa
AA seq
DB search
MHSRLKALLARAAIKSASLYSPSHLRNSRVVPIGDYTTVANVVENNVCSKHQSLSRQPVL
SRRRFCGYAAEQFSDDEYECDYENHPPSSSVANIDEWKWKISMLLQNDTDQEIISRDKRD
KRDFEQISNLAKRMGLYCQLYGKVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVES
LLQEHLDRTSLNSKKACQISNEIESTNPVENVDSAEHADPFLDASVMEKVLQRRSLRLRN
MQRTWQESPEGRRMLDFRKSLPAFKEKERLLQAIARNQVVVISGETGCGKTTQLPQYILE
ANIESGRGAFCNIICTQPRRISAMTVAERVSAERGEPLGESIGYKVRLEGMKGKNTHLLF
CTSGILLRRLLSDRNLDGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATL
NADLFSNYFGGAPMIHIPGFTYPVRVCFLEDILEMTGYKITSFNQIDDYGQEKLWKTQKQ
LAPRKRKNQITSLVEEALSKAKFENYSSRVQESLSCWIPDSIGFNLLEAVLCHITRKERP
GAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFERPPPNVRKI
VLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ
PGECYHLYPQCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVESIGDFISASLQPPEPLAV
QNAVDFLKMIGALDENENLTHLGKFLSVLPVDPKLGKMLIMGAIYCCFDPILTIVAGLSV
RDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSLQ
TLQAIHSLRKQFTYILKDAGLLDTDGSINNRLSHNQSLVRAVICSGLFPGIVSVVPRETT
MSFKTMDDGPVLLYANSVNARYQMIQYPWLVFGEKVKVNTVFIRDSTGVSDSVLILFGGK
LECGATGGLLKMLEGYVEFFMDPSLAECYLKLKKEADKLLIQKLGHPSMDIHKEGKYLML
AVQELVSGDQCEGRFVFGRDSKKPRESCDKERFTKDGTNPKSLLQTLLMRAGHSPPKYKT
KHLKTNEFRALVEFKGMQFVGKPKKNKAIAEKDAAIEALAWLTQTSENNHVEDVNSPPDV
TDNMLKLLGRRRRSKRNPR
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgcattcccggctaaaggcgttacttgcacgcgccgccataaaatccgcctccctttat
tctccttcacatttgcggaactcccgagttgtgcctatcggtgactacaccaccgttgcc
aatgttgttgaaaataatgtttgctccaaacaccaaagcttgagtcgccaacctgtccta
tcgcggcgtcggttctgtggctacgccgctgagcagttctccgacgacgaatatgaatgc
gattacgaaaaccacccaccgtcatcatcagtggcgaatattgatgagtggaaatggaaa
atcagcatgctgttacaaaatgatacagatcaagagattatttctcgtgataaaagagat
aaacgggactttgaacaaatatccaaccttgccaaacggatggggctttactgtcagctg
tatgggaaagtgatcgtggccagtaaggttcctcttcccaactacaggccagatctggat
gataagcggcctcagagggaggttgtcatcccattgagcttgcaaagaagggttgagagt
ttgcttcaggaacatcttgacagaacaagcttaaactccaaaaaggcctgtcagatttca
aatgagattgagtctaccaatccagttgaaaatgtcgattcagctgaacatgcagatccg
tttctcgatgcttctgtcatggagaaggttttgcagagacggagcttgcgattgcgtaat
atgcaaagaacttggcaggaatcacctgaaggacgacgaatgctggattttaggaaatcc
ctccctgcatttaaggagaaggaaaggctccttcaagcaattgcaaggaatcaggttgtg
gtgatttctggagagactggttgtggtaagaccacacaactccctcagtatattttggag
gcaaatatagagtctggcaggggagcgttttgtaacataatctgtacacagccccgaaga
atatccgcaatgactgttgcagaaagagtttctgcagagaggggagagcctcttggtgaa
tcaattggatataaagtgcgattagagggaatgaaagggaagaacacacatttgcttttc
tgtaccagtggaattttgctccgaaggctcttgagtgatagaaacctggatggtgtaact
catgtttttgttgatgaaattcatgagcgaggcatgaatgaagatttcttgttgattgtc
ttgaaggatcttcttccacgacgaccggatttgagattaatcttgatgagtgccactctg
aatgctgatctattttctaattattttggtggagcacctatgattcatattcctggtttc
acttatcctgtaagagtatgttttctggaagatatactggaaatgacgggatataagata
acttcgttcaaccaaatagatgattatggccaagagaagctttggaagacacaaaaacaa
ctagctccacggaaaagaaaaaatcaaattacctctcttgttgaggaagctctgagtaaa
gcaaaatttgagaactatagctctagagtacaagagtctttatcgtgctggatacccgac
tctattgggttcaatctcttagaggctgtgttgtgccatataactcgcaaggaacgccct
ggggctgtgttggtatttatgactgggtgggaggatattagttgtttgagggatcagtta
aaagctcatcctctcttaggggatccaaatagggtccttctgcttacatgccatggctca
atggcaacttctgaacagaaactcatatttgagaggccacctcccaatgtacggaaaata
gtgcttgctacgaatatggctgaggcaagtattacaatcaatgacatagttttcgttgtt
gattgtggtaaagcaaaagagactacttatgatgctctaaataacacaccgtgtctacta
ccttcatggatatcccaagcttctgctcggcaaagaaggggtagggctggccgtgtacag
ccaggggagtgctaccacctgtatccacaatgtgtatatgaagcttttgctgaatatcaa
ctccctgaacttttaagaactccattgaactctctctgcttgcaaattaaaagtttacaa
gtcgaaagtattggggattttatatctgcttctcttcagccacctgaaccactggctgtt
caaaatgctgttgattttttgaagatgattggtgctttggatgaaaatgagaaccttact
catcttggaaagttcttgtctgtgcttccggtggatcctaagctggggaaaatgctaatc
atgggggctatctattgctgctttgaccctatactgacaattgttgctggtctcagtgtc
agggatccttttcttttgcctcaagataaaaaggatttagctggaacagctaagtcgaga
ttctcagcaaaggactatagtgatcatatggcacttgttcgtgcatatgaaggatggaag
gatgctgaaagagaaggatcagcatacgagtattgttggagaaacttcctctctctccaa
actcttcaagctatccattctcttcgtaaacaattcacttacatcttgaaagatgccggg
ttgctagatacagatgggtcaattaataacagattaagtcacaatcaatcattggttcgt
gctgtaatatgttctggcctatttcctggcattgtgtctgtagtgcctcgtgagactaca
atgtctttcaaaacaatggatgatgggcccgtcttgctctatgcgaattctgtgaatgca
cgataccaaatgatacaatatccctggttggtatttggtgagaaggtgaaagtcaatact
gttttcatacgtgattcaactggagtatctgattctgttttgatcctgtttggtggtaaa
ctggagtgtggtgctacgggaggacttctgaaaatgttggagggatatgttgaatttttc
atggacccaagcttggccgagtgctatctgaaactcaagaaggaggcagataaactatta
atacagaaacttggacatcccagcatggacattcacaaggaaggcaagtacctaatgctt
gctgttcaggagttggtgtcaggcgaccagtgtgaagggaggtttgtctttggccgtgat
agcaagaaacccagagaatcctgcgataaagagaggtttacgaaagacggaacaaatcca
aagagcttgcttcagacactattgatgagagctggccactcacctcccaagtacaaaacc
aagcatctcaagacaaatgaattccgggctctagttgagttcaagggcatgcagtttgtg
gggaaaccaaagaaaaataaggccatagcagagaaagatgctgctatagaagcattggca
tggttaacccaaacatctgagaacaatcatgtcgaagatgtcaattctccgcctgatgtc
accgacaacatgttgaaacttcttggcaggcggaggaggtcgaagcgcaatccacgttaa
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