Salvia splendens (scarlet sage): 121742273
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Entry
121742273 CDS
T07627
Name
(RefSeq) cleavage stimulation factor subunit 77-like isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121742273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121742273
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121742273
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GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_CcmH_CycH
TPR_2
TPR_16
TPR_Edg1
Motif
Other DBs
NCBI-GeneID:
121742273
NCBI-ProteinID:
XP_041991306
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Position
1:complement(11565907..11576369)
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AA seq
763 aa
AA seq
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MATETPQPNSLSLSGTFSSSNKLTVEAAEKLANEALRLPMSDAVPIYEHLLANFPTSVKY
WKQYVEALMASNNDEATKQVFSRCLLNCLQVPLWRCYIRFIRKVNDKKGIEGQEETKKAF
EFMLNYVGSDIASGPVWMEYVAYLKSLPAQTTLEESQRMTTIRKLYQRAIVMPTHHVEQL
WRDYENFENSVSRALAKGLVTEYQPKYNSARAVYRERKKYVDEIDWNMLAVPPSGTPKEE
MQWVAWKKLLSFEKGNPQRIDNASANKRITFAYEQCLMYLYHYPDIWYDYAMWHTINGSQ
DSAVKVFQRALKALPDSGMLKYAYAELEETRGATQAAKKVYESLLGDGVNATALSHIQFI
RFLRRTEGVEAARKYFLDARKSPNCTYHVYVAYAMMAFCLDKDAKLAHNIFEAGLKRFMH
EPSYILEYADFLCRLNDDRNIRALFERALSSLPPDESVEVWKRFAQFEQTYGDLTSMLKV
EQRRKEALCRMTENGESVLENSLQDVISRYSFMDLWPCSTKDLDHLSRQEWLFRGVNKKI
ENPTVNGPSSADRTTADIPINSNVSSKVVYPDVSRMVIYAPGQKPGITTPVVSGVSSTLP
NGISGGAATINDTLKSLPPTLAVFVSNLPAVEGPSPDADFVISICLQSNIPPASAKHSAP
QQLPSGPVPSASDVSGSSKLRQTRDRQAGKRKGMERQDDDDTSTIQSQPLPKDAFKIRQL
QKALGTSSRTGGASSRTGGTSSRTGGSASYGSGFSGDFSGSSG
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggccactgagacaccacaaccgaactcgctctctctttctggtaccttctcttcttca
aataagcttaccgtcgaagctgctgaaaagcttgctaatgaggcgctgcggttgccaatg
tcagatgcagtgcccatatatgagcatcttctggccaatttccccacttcggtaaaatac
tggaagcaatatgttgaggctctcatggccagcaacaatgatgaagcaacaaaacaagtt
tttagccgttgtcttttgaattgcttgcaagttcctctttggcgctgctacattcgcttc
ataaggaaagttaatgataagaagggaatagagggtcaagaagagacaaagaaagctttt
gaattcatgcttaactatgttggatcggatatagcatctggccctgtatggatggagtat
gttgcatatttaaaatcactacctgcacaaacaactttagaagagtcgcagcggatgact
accatacgtaaactataccagagggctattgttatgcctactcatcatgttgaacaactt
tggagagactatgagaattttgagaattcagtgagccgtgcactggcaaaagggttggtg
actgaatatcaaccaaaatataacagtgcaagggctgtttaccgagaacgtaaaaagtat
gttgatgaaattgactggaatatgcttgctgttcctccttctggtactcctaaggaggaa
atgcaatgggtggcctggaaaaagttattaagttttgagaaaggtaatccacagagaatt
gacaatgcttcagcaaataaaaggattacatttgcttatgaacagtgcctcatgtacttg
tatcattaccctgatatatggtatgactatgccatgtggcataccataaatggttcacaa
gactcagctgttaaagtttttcaacgcgcactgaaggctcttcctgattcgggtatgctt
aagtatgcctatgctgagctagaggagactcgtggggcaactcaggcggcaaaaaaagtg
tatgaaagtcttcttggagatggcgtgaatgcaacagcattatctcacatccagtttata
cgattcttaaggaggactgaaggagttgaagctgctcgcaaatactttctggatgcccga
aaatctccgaactgcacctaccatgtttatgttgcatatgcaatgatggcattctgtcta
gataaagatgcaaagcttgcacacaacatatttgaagcaggtctcaaacgttttatgcat
gaacccagctacattcttgaatatgctgatttcttgtgccgcttgaacgatgatagaaat
atccgtgctttgtttgagcgtgctttgagctcacttccacctgatgaatctgttgaggtt
tggaaaagattcgcccaattcgagcagacgtatggagatcttaccagcatgttaaaggtt
gagcaaaggaggaaagaagctttatgccgtatgactgagaatggagaatcagttttagaa
aattctctgcaagatgtcatttcgcggtatagtttcatggatctgtggccttgctcaacg
aaggacttggatcatttatctcggcaagagtggctctttagaggtgtcaataagaagatt
gaaaatcctactgtaaatggacctagctctgcagatcggactacagcagacattccaatt
aattcaaatgtttctagcaaggttgtttatccagatgtatcaagaatggtgatttatgct
cctggacaaaagcctgggatcacaaccccggtggtatcaggtgtttcaagcacattgcca
aatggcattagtggaggagcagctacaatcaatgatacactgaaatccttacctccaaca
ttggcagtctttgtatcaaatttgccagccgttgaaggtccatctcctgatgctgatttt
gtaatatccatatgtttgcaaagcaacataccaccagctagtgcaaaacacagtgcacct
caacaattgccatctggacctgttccaagtgccagtgatgtatctggttcaagtaaatta
agacaaacaagagataggcaagctggaaagagaaaaggaatggagaggcaagatgatgat
gacacgtctactatccaaagccaaccactacctaaagatgctttcaagatacggcaactg
cagaaagcgcttggcactagttcgcgtactggtggggctagttctcgtaccggtggaact
agttcgcgaactggtggctctgcatcatatgggagtggattttcaggcgatttctctgga
agttcgggttga
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