Salvia splendens (scarlet sage): 121742330
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Entry
121742330 CDS
T07627
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121742330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121742330
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
121742330
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
DUF1258
DZR
Zn_ribbon_3
Motif
Other DBs
NCBI-GeneID:
121742330
NCBI-ProteinID:
XP_041991377
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All DBs
Position
7:29755185..29763982
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AA seq
539 aa
AA seq
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MSIDLILKPSCGACGSTTELYGSTCKHLTLCVSCGKSMAEKRSKCYECGTPITRLIREYN
VRASSSNDKNYFIARFASGLPNFKKKNENKWTLQKEGLQGRQVTDTLREKFKDKPWLLED
ETGQFQFHGHLEGTQTATYYLLMLQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMNN
RRKTADGYQRWMMKAANNGAAAFGEVEKFDGREGASGSGRGRKKTTGDDDEANVSDRGDE
DEDEESARKNRLGLNKKSGDDDEEGPRGGDLDFDDDDIEKGDDWEHEEIFTDDDEAVGID
PDERDDLAPEIPAPPEIKQDDEDEDEADEEDKEGGLSKSGKELKKLLGRSNGLNDSDSED
DDDDDDADDDISPVIPKKEAPKEEPIHNNSPLKATNSTAGRGTPSTSKSSKGKRKVSSDD
SKTPNSAPLKKVKTENETRAVKDENASSLKSVAHPKGAMPPTSSKSVSAPATGPVTEEEI
RAVLLPKTPVTTKDLLAKFRSRLKTKEEKDAFSAIMKRISKIQKTNGATNYVVLRDNLA
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattgatttgatattgaagccgtcgtgcggtgcctgtggatcgacgacggagctc
tacggcagcacgtgcaagcacctgacgctatgcgtgagctgtggcaaatctatggccgag
aaacgttccaagtgctacgagtgcggaacccctatcactcgcctgattagggaatataat
gtacgtgccagttccagcaacgacaaaaattatttcattgcaagatttgcctcaggatta
ccaaattttaagaagaagaatgagaataaatggaccttgcagaaggaaggtttgcagggg
cgtcaagtgactgatactctgagggagaaattcaaggataaaccttggctactggaagac
gaaacgggtcagtttcaattccatggtcaccttgagggcacacagacagccacatattat
cttctaatgcttcaaggaaaggaatttgttgctattcctgctgggtcctggtacaatttc
aacaaagtggcacaatataagcaactaaccttggaggaagccgaagaaaagatgaataat
agaaggaaaacagctgatggctaccagagatggatgatgaaagcagcaaacaatggagct
gcagcctttggtgaagttgagaagtttgatggtcgggaaggtgcatctggtagtgggagg
gggcgcaaaaaaactacaggggatgatgatgaagccaatgtttcagatagaggagacgaa
gatgaagatgaagagtcagcaagaaaaaacaggttgggtctcaacaagaaaagtggggat
gacgatgaagaaggtccaagaggtggtgaccttgactttgatgatgatgatattgagaag
ggtgatgattgggaacatgaagaaattttcactgacgacgatgaagcagttggaattgat
ccggatgaacgtgatgatttggcccctgagatccctgcacctccagaaattaagcaggat
gatgaggatgaggatgaagctgacgaagaagataaggagggagggttgagtaaatctgga
aaagagctgaagaagctactcgggcgatctaatgggctgaatgattctgactccgaggat
gacgatgatgacgatgatgcggatgatgatatatcaccagtgatcccaaagaaggaagct
ccaaaagaggagccaattcataacaacagtccccttaaagcaacaaattctacagctggt
cgtgggacaccatctacttcaaaatcgtccaaggggaaaagaaaagtcagcagtgatgat
tcaaaaacaccgaacagtgcacctttaaagaaagtgaaaacagaaaatgaaacaagagct
gtgaaagatgagaatgcttcatccttaaaaagcgttgcacatcctaaaggtgcaatgcca
cccacatcatcaaaaagtgtgtcagcaccagcaactggaccagttactgaagaagaaatt
agggctgttctactaccaaagacgccagtgaccacgaaggatcttctggctaaattcaga
tccagattgaagacaaaagaggaaaaggatgctttttcagctataatgaaaaggatatca
aagatccaaaagaccaatggtgccacaaactacgtagttcttagagataacttggcgtag
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