Salvia splendens (scarlet sage): 121742462
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Entry
121742462 CDS
T07627
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121742462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121742462
03012 Translation factors [BR:
sspl03012
]
121742462
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121742462
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121742462
Translation factors [BR:
sspl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121742462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
R3H
HA2_C
OB_NTP_bind
Ank_2
Ank_5
AAA_22
HA2_N
ATPase
AAA_19
nSTAND3
Ank
Rad17
Ank_3
Ank_4
AAA_7
ABC_tran
NACHT
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
121742462
NCBI-ProteinID:
XP_041991533
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All DBs
Position
7:36897586..36904155
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AA seq
1205 aa
AA seq
DB search
MGPPGSSGKEAGKKRRKGRVPPNNMKVAEATRIRIAEILENFRSSDDEVYKFEENLTNQE
RAAVHVMCRKVGFMSKSHGKGQDRRICIYKRKREVSSMKGRENIASFRFSGESQAALQEL
FSCYPPKDVDMSGNKLEVSRGKSDNGVSGDDFFCRPTTNSSEIASKIQTLASRNEKETSL
KQITQNRSKLPIASFRDAITSSVESNQVVLVCGETGCGKTTQVPQFLLDHAWSKGETCKV
VCTQPRRISATSVAERIASERGESIGDSVGYKIRLETKGGRQSSLVFCTNGVLLRVLVNK
DNSSTKRKKASKKGQSSVADITHIIVDEIHERDRFSDFMLAIIRDMLPSHPHLRLVLMSA
TIDADRFSKYFGGCPVIRVPGFTYPVKSYYLEDVLALVRSSENNHVKCTNEDVAVKDSPL
TEECRVALDEAIELASSTDDFDPLLELISSQGDSRIFNYLHSKTGVTPLMVSAEQGRVSY
VCTLLSFGVDCDLRCNAGKTALDYAEQGNQGEVTEIIKKHLGKAFTQSDKEQDLLDKYLS
HVDPELIDCLLSIEQLLRRICNDSTDGAVLVFLPGWDDINRTREKLLSSPYFKDPSKFLV
IALHSMVPLVEQKKVFKRPPPGCRKIVLSTNIAETSVTIDDVVYVIDSGRMKEKSYDPYN
NVSTLHSSWISKASAKQREGRAGRCQAGICYHLYSKFRASSLPEFQVPEIKRMPIEELCL
QVKLMDPSCKIEEFLQKTLDPPVYETIQNAITVLQDIGALSLEEQLTELGQKLGALPVHP
LTSKMLFFAILLNCLDPALTLACASDCKDPFILPMLPNERQKAQVARLELASLYGGNGDQ
LAIIAAFDCWKMAKQRGDEAKFCSQYFVSAATMKLISSMRKKLEGELLRHGFIPEDASRC
SLNARDPGILHAVVFSGLYPMVGRVIPQGNRSLVETASGNKVRLHQFSTNGKLSSKKFSI
PPLIMFDEITRGDGGIHIRNCCVVGSLPLMLLATDIVVAPTEEDDDEGDESDADEPDADN
DSDEDDKAETHSSSKSNSEKILSAPENVVKVVVDRWLPFQLMALDVAQIYCLRERLSSAI
LFKVTKPRDVLPEHLGASLYAIACILSYDGMSGISLPPEPVDTLTTMVSVADISHGRRVP
IKSYLKSLLYPDHSYPNQSHTSHHHTSHLQKQVSKSATNWSAPQGTSTAKGNYSKRQRGN
GNGFR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgggcccaccaggttcatccgggaaggaggcggggaagaagcggcggaaagggagagtg
ccgccaaataatatgaaggttgccgaggccacccgcattcgcatcgctgagattctggag
aacttccggagttctgatgatgaagtatacaaatttgaagagaacctgactaatcaggag
cgggcggcagtgcacgttatgtgcagaaaggtggggttcatgtcaaagagtcacgggaaa
gggcaggatcgccgcatttgtatctataaacgtaaaagggaagtcagcagtatgaaaggg
agagagaacattgcttctttcagattttcaggggaatcacaggccgctttacaggaattg
ttttcttgctatccccctaaggatgtggatatgagtgggaataaacttgaagtcagtagg
ggaaaaagtgataatggagtctcaggagatgattttttctgcagacctacgacgaattca
tctgaaattgcaagcaagatacaaacacttgcttcccgaaatgagaaagagacgagcttg
aaacagatcacacagaacaggtccaagcttcctattgcatcttttagggatgctatcaca
tcttcagtagaatctaaccaggttgtacttgtatgtggtgaaactggatgtgggaaaaca
acacaggtccctcagtttctcctggaccatgcatggagtaaaggagagacgtgtaaagtt
gtttgtactcagccgaggcgaatctctgccacatcagtcgctgaaagaattgcttctgaa
agaggtgaaagtattggagattctgttggatacaagattcgactggaaaccaaaggtgga
aggcagtcctctcttgtgttctgcaccaatggggttctgctgagggttctagtcaataaa
gataacagcagtacaaaaagaaaaaaggcgtctaaaaaaggacagagttctgtggctgat
ataacccacataatagtggatgaaattcatgaaagggatcgcttctccgatttcatgctc
gcaataatcagagacatgcttccttcgcatcctcacctgcgtctggtattgatgagcgcc
accattgatgcggaccgcttttcaaagtactttggaggctgcccagttattcgtgtaccg
ggttttacatatcctgtaaaaagttattacttggaggatgtactagcacttgtgagatca
tccgaaaataatcacgttaagtgcacaaatgaggacgtggcagtgaaggactctccttta
actgaggaatgccgagttgctcttgacgaggctattgaattagcttcatcaaccgatgac
tttgatccccttctcgagcttatatcttctcaaggagattcgagaattttcaattacctg
cactctaaaaccggagtaacccccttgatggtgtcagccgagcaaggaagagttagttat
gtttgcacacttctctcgtttggtgtagactgtgacttgcggtgtaatgcagggaagaca
gctcttgattatgccgaacaaggcaatcagggggaagttactgaaatcataaaaaaacac
ttgggaaaagcatttactcagtcagataaggaacaagatttactcgataaatacttatcg
catgttgaccctgaacttatagattgtctgctttctatcgaacaacttcttaggcgaatc
tgtaatgactcgactgatggagctgttctcgtatttcttccgggttgggatgatataaac
agaacgcgagagaagttgctatcaagtccttatttcaaggatccatcaaaatttctcgtt
attgctcttcactctatggttccattggtcgagcaaaagaaagttttcaaacgtccgcct
cctggatgccgcaaaattgttctttctactaatattgccgaaacatcagtcaccatcgat
gatgttgtttatgtcatagacagtgggcggatgaaagagaaaagttatgacccgtataac
aacgtgtcaactcttcattcttcttggatatcaaaggcaagtgctaagcaacgagaagga
cgtgcagggcggtgtcaagcaggtatttgttatcatctatattcaaaattccgagcttct
tctcttccggagttccaagttcccgagataaagaggatgccgatagaagagctgtgcctg
caggtgaagcttatggatccatcttgcaaaatcgaagaatttttgcagaagacactggat
ccgcctgtttatgagactatacagaatgcaataacggttcttcaggatatcggcgcgttg
tctctagaagagcaactcacggaacttgggcagaaactcggagctctacccgtccaccct
ctgaccagcaaaatgttattttttgcgatattgttgaattgccttgacccggcattgact
ttagcttgcgcttccgattgcaaagaccccttcattttgccaatgcttcctaatgaaagg
caaaaagctcaagtggctagactagaactggcttcactctatggtggcaacggtgaccag
ttagctataattgctgccttcgattgctggaaaatggcaaaacaaaggggcgacgaagcg
aagttttgttctcagtacttcgtatctgcagcaaccatgaagttgatttcgagcatgcgg
aagaaactcgaaggcgaactacttcggcatggttttattccggaagatgcctcccgctgt
agcctcaacgcacgtgaccctggtatactccatgctgtagttttctcaggtctatatccg
atggttgggagagttattccgcaaggtaatagatcccttgtcgaaactgccagcgggaat
aaggtaaggttgcaccagttttcgaccaacggcaagctctcctcgaagaaattcagtatc
cctcctttgatcatgtttgatgagataacccgtggagacggcggaatacatattaggaac
tgctgtgtcgtaggttcgctccccttaatgttgttagccaccgatattgtcgtggccccg
actgaggaagatgatgatgagggtgatgagagcgatgctgatgaacctgatgccgacaat
gacagtgacgaggacgataaagcagagactcatagttcatcgaaatccaacagcgaaaag
atcttgtcggcgccagagaatgtcgttaaagtcgtagtggatcgatggctgccgtttcag
ttgatggctcttgatgttgctcagatatactgcttgagggagagactatcttcagcaatc
ttgttcaaggtaacgaaaccgagagacgttcttcctgaacatcttggtgcctcactgtat
gcaatagcctgtatcctctcttacgatgggatgtccgggatctcgctgccaccagaaccc
gtcgacaccctcaccacgatggtcagtgtcgcagacatcagccatggtaggagggtgccg
atcaagagctatctcaaatcgcttctttaccctgaccactcctatccaaaccagagccac
acgtcgcaccatcacacaagccatcttcagaagcaagtgtcaaaaagcgctacgaactgg
tcggccccgcaagggacgagcaccgcgaaggggaactactccaagcggcagcgtggcaat
ggtaatggatttaggtga
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integrated database retrieval system
